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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0145000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.93 (0.0283) R2 : 0.236
β1 : 0.0561 (0.104) R2dD : 0.000371 R2D : -0.00392
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.61 (0.48) R2dE : 0.763 R2E : -0.314
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 11.1 (1.13) R2dD*E : 0.545 R2D*E : -0.519
γ1 : 0.0369 (0.0602) R2dN8 : 0.0013 R2N8 : -0.00335
σ : 0.525
deviance : 127
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 83.91
memory length : 37
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 11.1
open length of G : 0.697

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
126.7 0.529 2.93 0.0536 0.0931 5.28 -0.316 10.4 0.0466 3.35 82.01 27 11 1.23
151.29 0.573 2.89 0.0117 0.0658 1.71 -0.418 -- 0.0616 0.654 78.98 98 11.1 0.715
126.76 0.524 2.92 0.055 0.0758 5.36 -- 10.7 0.0558 3.16 82.54 31 11.1 0.866
150.8 0.572 2.89 0.0236 0.0828 1.67 -- -- 0.0532 1.43 76.55 66 11.6 0.183
127 0.525 2.93 0.0561 -- 5.61 -- 11.1 0.0369 -- 83.91 37 11.1 0.697
165.67 0.603 2.9 -0.0719 0.0443 -- -0.347 -- 0.0124 4.53 -- -- -- --
165.8 0.603 2.9 -0.0687 0.0722 -- -- -- 0.0143 7.89 -- -- -- --
149.87 0.57 2.89 -0.00144 -- 1.71 -- -- 0.0701 -- 77.28 54 11.6 0.0101
149.35 0.569 2.89 -- 0.0817 1.76 -- -- 0.0596 3.07 77.87 72 11.6 0.00716
166.08 0.602 2.9 -0.0679 -- -- -- -- 0.0153 -- -- -- -- --
165.93 0.603 2.9 -- 0.0717 -- -- -- 0.022 7.96 -- -- -- --
149.64 0.57 2.89 -- -- 1.79 -- -- 0.043 -- 79.81 55 11.6 0.0166
166.21 0.602 2.9 -- -- -- -- -- 0.0228 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 127.93 humidity 80.0 30 > th dose dependent rect. 11 1
11 130.53 temperature 25.0 720 > th dose dependent rect. 2 2
19 135.60 humidity 80.0 10 > th dose independent rect. 11 1
55 144.91 temperature 25.0 720 > th dose independent rect. 4 1
87 150.38 temperature 25.0 1440 < th dose independent rect. 4 1
104 151.60 temperature 25.0 720 > th dose independent rect. 2 1
107 151.81 temperature 25.0 4320 > th dose dependent rect. 23 7
111 152.16 temperature 25.0 4320 > th dose independent rect. 2 1
125 152.73 wind 9.0 14400 > th dose dependent rect. 18 1
129 152.98 temperature 25.0 4320 > th dose dependent rect. 23 1
155 154.05 temperature 30.0 4320 > th dose independent rect. 17 1
156 154.05 temperature 30.0 4320 < th dose independent rect. 17 1
159 154.10 temperature 25.0 4320 < th dose independent rect. 2 1
251 156.08 wind 3.0 720 > th dose independent rect. 5 1
284 156.64 radiation 10.0 90 < th dose independent rect. 10 1
303 156.91 humidity 90.0 270 > th dose independent rect. 8 1
323 157.18 wind 1.0 4320 < th dose dependent rect. 9 1
334 157.32 radiation 10.0 90 < th dose dependent rect. 10 1
444 158.38 temperature 30.0 4320 < th dose independent rect. 17 9
453 158.44 wind 5.0 10 > th dose independent rect. 12 1
458 158.47 temperature 30.0 4320 < th dose independent rect. 17 5
460 158.48 temperature 30.0 4320 < th dose independent rect. 17 3
464 158.51 temperature 30.0 4320 < th dose independent rect. 17 14
500 158.72 wind 5.0 720 > th dose dependent rect. 6 1
515 158.90 wind 1.0 4320 < th dose independent rect. 9 1
615 159.48 wind 9.0 14400 < th dose independent rect. 18 1
619 159.51 wind 1.0 4320 > th dose independent rect. 9 1
624 159.53 wind 9.0 14400 > th dose independent rect. 18 1
626 159.53 humidity 60.0 90 > th dose dependent rect. 21 15
656 159.69 wind 5.0 10 > th dose independent rect. 24 6
661 159.70 wind 5.0 30 > th dose independent rect. 24 4
663 159.70 wind 5.0 30 > th dose dependent rect. 24 4
679 159.74 wind 5.0 10 > th dose independent rect. 24 2
681 159.74 precipitation 0.1 90 > th dose independent rect. 23 2
684 159.74 wind 5.0 10 > th dose dependent rect. 24 2
686 159.74 precipitation 0.1 90 > th dose dependent rect. 23 2
703 159.77 precipitation 0.1 1440 > th dose independent rect. 22 1
707 159.77 precipitation 0.1 1440 > th dose dependent rect. 22 1
767 159.96 humidity 70.0 90 > th dose dependent rect. 10 17
770 159.97 wind 1.0 14400 < th dose dependent rect. 3 1
819 160.09 wind 5.0 10 > th dose dependent rect. 22 6
870 160.22 wind 5.0 10 > th dose independent rect. 22 3
881 160.27 wind 3.0 1440 < th dose independent rect. 5 2
926 160.37 wind 3.0 10 > th dose independent rect. 10 2
945 160.40 wind 3.0 90 > th dose independent rect. 10 2
948 160.41 humidity 80.0 270 > th dose dependent rect. 7 19
956 160.43 humidity 80.0 270 > th dose dependent rect. 7 17
982 160.47 wind 1.0 1440 < th dose independent rect. 22 1