BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0145000 Os11g0145000|J023012M05
(73 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G56960.1 | chr3:21080957-21083885 FORWARD LENGTH=780 108 6e-25
AT3G07960.1 | chr3:2535274-2538090 FORWARD LENGTH=716 104 1e-23
AT2G41210.1 | chr2:17173627-17176575 FORWARD LENGTH=773 103 1e-23
AT1G21980.1 | chr1:7735053-7738309 FORWARD LENGTH=753 92 5e-20
AT1G77740.1 | chr1:29220632-29223861 FORWARD LENGTH=755 89 4e-19
AT2G26420.1 | chr2:11239434-11242239 REVERSE LENGTH=706 87 2e-18
AT3G09920.1 | chr3:3040426-3043676 REVERSE LENGTH=816 70 2e-13
AT1G60890.2 | chr1:22412452-22416498 REVERSE LENGTH=782 64 1e-11
AT1G10900.1 | chr1:3632396-3636416 REVERSE LENGTH=755 61 9e-11
>AT3G56960.1 | chr3:21080957-21083885 FORWARD LENGTH=780
Length = 779
Score = 108 bits (270), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 48/61 (78%), Positives = 55/61 (90%)
Query: 12 GYRHAVGRQSAPASLDLKSSAFDPKEKVWTRFPPEGSKHTPPHQSCDFRWKDYCPLVFRS 71
G RHAVG+Q+ SLDLK SAFDPKEKVWTRFPPEG+K+TPPHQS +F+WKDYCPLVFRS
Sbjct: 399 GIRHAVGKQAPVVSLDLKHSAFDPKEKVWTRFPPEGTKYTPPHQSSEFKWKDYCPLVFRS 458
Query: 72 V 72
+
Sbjct: 459 L 459
>AT3G07960.1 | chr3:2535274-2538090 FORWARD LENGTH=716
Length = 715
Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 55/61 (90%)
Query: 12 GYRHAVGRQSAPASLDLKSSAFDPKEKVWTRFPPEGSKHTPPHQSCDFRWKDYCPLVFRS 71
G RH+VGR + SLDLK+SAFDPKEK+WT+FP EGSK+TPPHQSC+F+WKDYCP+VFR+
Sbjct: 338 GIRHSVGRPAPATSLDLKASAFDPKEKLWTKFPSEGSKYTPPHQSCEFKWKDYCPVVFRT 397
Query: 72 V 72
+
Sbjct: 398 L 398
>AT2G41210.1 | chr2:17173627-17176575 FORWARD LENGTH=773
Length = 772
Score = 103 bits (258), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 54/61 (88%)
Query: 12 GYRHAVGRQSAPASLDLKSSAFDPKEKVWTRFPPEGSKHTPPHQSCDFRWKDYCPLVFRS 71
G RH+VGRQ+ ASLDLK SAFDPK+K+W RFP EG+K+TPPHQS +F+WKDYCPLVFRS
Sbjct: 392 GIRHSVGRQAPAASLDLKPSAFDPKDKIWRRFPREGTKYTPPHQSTEFKWKDYCPLVFRS 451
Query: 72 V 72
+
Sbjct: 452 L 452
>AT1G21980.1 | chr1:7735053-7738309 FORWARD LENGTH=753
Length = 752
Score = 92.0 bits (227), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 49/61 (80%), Gaps = 1/61 (1%)
Query: 12 GYRHAVGRQSAPASLDLKSSAFDPKEKVWTRFPPEGSKHTPPHQSCDFRWKDYCPLVFRS 71
G R++VG+ ++ DLK + FDPKEK WTRFPPEG+K TPPHQS DFRWKDYCPLVFR
Sbjct: 364 GIRYSVGKHASIVR-DLKQTDFDPKEKFWTRFPPEGTKTTPPHQSVDFRWKDYCPLVFRR 422
Query: 72 V 72
+
Sbjct: 423 L 423
>AT1G77740.1 | chr1:29220632-29223861 FORWARD LENGTH=755
Length = 754
Score = 89.4 bits (220), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 46/61 (75%), Gaps = 1/61 (1%)
Query: 12 GYRHAVGRQSAPASLDLKSSAFDPKEKVWTRFPPEGSKHTPPHQSCDFRWKDYCPLVFRS 71
G R++VG+ A DLK S FDP EK WTRFPPEGSK TPPH S DFRWKDYCPLVFR
Sbjct: 366 GIRYSVGKH-ASVVRDLKQSDFDPSEKFWTRFPPEGSKTTPPHLSVDFRWKDYCPLVFRR 424
Query: 72 V 72
+
Sbjct: 425 L 425
>AT2G26420.1 | chr2:11239434-11242239 REVERSE LENGTH=706
Length = 705
Score = 87.0 bits (214), Expect = 2e-18, Method: Composition-based stats.
Identities = 39/61 (63%), Positives = 48/61 (78%), Gaps = 5/61 (8%)
Query: 12 GYRHAVGRQSAPASL--DLKSSAFDPKEKVWTRFPPEGSKHTPPHQSCDFRWKDYCPLVF 69
G R++VG+ ASL +L+ S FDPK+K WTRFPPEGSK TPPH S +F+WKDYCP+VF
Sbjct: 338 GIRYSVGKH---ASLLRELRHSDFDPKDKQWTRFPPEGSKSTPPHLSAEFKWKDYCPIVF 394
Query: 70 R 70
R
Sbjct: 395 R 395
>AT3G09920.1 | chr3:3040426-3043676 REVERSE LENGTH=816
Length = 815
Score = 70.5 bits (171), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 39/61 (63%)
Query: 12 GYRHAVGRQSAPASLDLKSSAFDPKEKVWTRFPPEGSKHTPPHQSCDFRWKDYCPLVFRS 71
G R+ VG+ + ++++ F P+ W FP GS TPPH S DF+WKDYCP+VFR+
Sbjct: 404 GIRYTVGKITPIQRRQVRTADFGPRASFWMTFPRAGSTMTPPHHSEDFKWKDYCPMVFRN 463
Query: 72 V 72
+
Sbjct: 464 L 464
>AT1G60890.2 | chr1:22412452-22416498 REVERSE LENGTH=782
Length = 781
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 42/61 (68%)
Query: 12 GYRHAVGRQSAPASLDLKSSAFDPKEKVWTRFPPEGSKHTPPHQSCDFRWKDYCPLVFRS 71
G R+ VG+ + ++++S F + ++ FP GS++TPPH+S DF WKDYCP+VFR+
Sbjct: 367 GIRYTVGKITPVPPREVRASDFSERARIMMFFPRNGSQYTPPHKSIDFDWKDYCPMVFRN 426
Query: 72 V 72
+
Sbjct: 427 L 427
>AT1G10900.1 | chr1:3632396-3636416 REVERSE LENGTH=755
Length = 754
Score = 61.2 bits (147), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 39/61 (63%)
Query: 12 GYRHAVGRQSAPASLDLKSSAFDPKEKVWTRFPPEGSKHTPPHQSCDFRWKDYCPLVFRS 71
G R+ VG+ + ++++S F + FP +GS TPPH+S DF WKDYCP+VFR+
Sbjct: 342 GIRYTVGKITPVPRREVRASDFGKNARTKMFFPRDGSNFTPPHKSVDFSWKDYCPMVFRN 401
Query: 72 V 72
+
Sbjct: 402 L 402
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.137 0.485
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,019,146
Number of extensions: 74764
Number of successful extensions: 231
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 9
Length of query: 73
Length of database: 11,106,569
Length adjustment: 45
Effective length of query: 28
Effective length of database: 9,872,849
Effective search space: 276439772
Effective search space used: 276439772
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 104 (44.7 bits)