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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0144900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.06 (0.0551) R2 : 0.534
β1 : 4.43 (0.208) R2dD : 0.506 R2D : 0.252
β2 : 0.334 (0.131) R2dC : 0.00741 R2C : -0.0329
β3 : 1.83 (0.177) R2dE : 0.108 R2E : -0.0506
β4 : 3.36 (0.496) R2dD*C : 0.0455 R2D*C : -0.0222
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.17 (0.118) R2dN8 : 0.143 R2N8 : 0.000724
σ : 1.03
deviance : 487.09
__
_____
C
peak time of C : 23.8
E
wheather : temperature
threshold : 29.2
memory length : 1860
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
486.09 1.04 6.05 4.98 0.322 2.04 3.25 -3 1.14 23.8 29.5 1768 -- --
487.09 1.03 6.06 4.43 0.334 1.83 3.36 -- 1.17 23.8 29.2 1860 -- --
530.21 1.07 6.02 4.96 0.347 2.09 -- -3.34 1.26 22.9 29.4 1843 -- --
532.19 1.07 6.11 4.25 0.324 1.71 -- -- 1.11 22.7 29.3 1774 -- --
536.15 1.08 6.01 5 -- 2 -- -3.32 1.29 -- 29.4 1751 -- --
591.09 1.14 6.12 3.9 0.28 -- 3.13 -- 1.02 0.233 -- -- -- --
632.41 1.18 6.13 3.78 0.303 -- -- -- 1 2 -- -- -- --
537.82 1.08 6.1 4.25 -- 1.65 -- -- 1.12 -- 29.4 1740 -- --
1002.9 1.47 6.17 -- 0.628 1.69 -- -- 0.784 22.8 29.5 2016 -- --
637.93 1.18 6.12 3.79 -- -- -- -- 1.01 -- -- -- -- --
1008.17 1.49 6.22 -- 0.374 -- -- -- 0.583 2.25 -- -- -- --
988.4 1.46 6.2 -- -- 0.858 -- -- 0.587 -- 29.4 1873 -- --
1016.52 1.49 6.22 -- -- -- -- -- 0.591 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 447.94 precipitation 0.1 43200 > th dose dependent rect. 17 1
2 449.95 precipitation 0.1 43200 < th dose independent rect. 17 1
3 449.95 precipitation 0.1 43200 < th dose dependent rect. 17 1
4 450.46 precipitation 0.1 43200 > th dose independent rect. 17 1
5 454.86 wind 9.0 43200 > th dose dependent rect. 18 13
8 458.17 wind 9.0 43200 > th dose dependent rect. 17 15
10 459.65 wind 9.0 43200 > th dose dependent rect. 20 1
11 460.15 wind 9.0 43200 > th dose independent rect. 18 13
12 460.21 wind 9.0 43200 > th dose dependent sin 13 NA
19 462.94 wind 7.0 43200 > th dose dependent rect. 18 3
25 464.23 wind 9.0 43200 > th dose independent rect. 18 6
28 464.31 wind 9.0 43200 < th dose independent rect. 18 13
31 464.50 radiation 1.0 43200 < th dose dependent rect. 19 9
32 464.52 wind 7.0 43200 > th dose independent rect. 19 2
34 464.61 wind 9.0 43200 > th dose dependent rect. 18 6
42 464.89 wind 7.0 43200 < th dose independent rect. 19 2
48 465.29 wind 9.0 43200 < th dose independent rect. 18 4
56 465.93 wind 9.0 43200 < th dose independent rect. 18 6
57 465.97 wind 9.0 43200 > th dose independent rect. 17 4
60 466.20 radiation 10.0 43200 > th dose independent rect. 10 1
66 467.37 atmosphere 995.0 43200 > th dose independent rect. 12 1
67 467.38 wind 9.0 43200 > th dose dependent rect. 14 18
69 467.45 wind 9.0 43200 > th dose independent sin 12 NA
80 468.47 wind 7.0 43200 > th dose dependent rect. 14 21
108 469.92 atmosphere 1000.0 43200 < th dose independent rect. 11 1
130 470.68 wind 7.0 43200 > th dose dependent rect. 5 16
135 471.00 precipitation 0.1 43200 > th dose dependent rect. 17 4
139 471.12 precipitation 0.1 14400 > th dose dependent rect. 17 10
142 471.20 wind 7.0 43200 > th dose dependent rect. 2 19
150 471.43 wind 7.0 43200 > th dose dependent rect. 24 21
164 472.11 wind 9.0 43200 < th dose independent sin 12 NA
166 472.21 wind 9.0 43200 < th dose independent rect. 17 22
169 472.25 atmosphere 995.0 43200 < th dose dependent rect. 13 3
171 472.27 atmosphere 995.0 43200 < th dose independent rect. 9 6
172 472.31 humidity 80.0 14400 > th dose independent rect. 17 1
185 472.73 atmosphere 995.0 43200 < th dose dependent rect. 14 1
186 472.74 wind 7.0 43200 > th dose dependent rect. 17 23
193 472.90 wind 7.0 43200 > th dose dependent rect. 5 20
203 473.04 wind 7.0 43200 > th dose independent rect. 6 1
210 473.24 wind 7.0 43200 > th dose dependent rect. 5 22
211 473.27 radiation 1.0 43200 < th dose dependent rect. 1 1
214 473.34 wind 9.0 43200 > th dose independent rect. 17 22
244 473.85 wind 7.0 43200 > th dose dependent rect. 2 23
248 473.88 wind 9.0 43200 > th dose independent rect. 14 19
269 474.19 wind 9.0 43200 < th dose independent rect. 14 21
275 474.30 wind 7.0 43200 > th dose dependent rect. 10 23
276 474.31 wind 7.0 43200 > th dose dependent no NA NA
312 474.80 humidity 80.0 43200 > th dose dependent rect. 20 2
320 474.86 precipitation 0.1 14400 > th dose dependent rect. 17 8
325 474.88 wind 9.0 43200 < th dose independent rect. 14 19
336 475.01 atmosphere 1000.0 43200 < th dose independent rect. 4 9
351 475.21 wind 7.0 43200 > th dose dependent rect. 20 23
362 475.31 precipitation 0.1 14400 < th dose independent rect. 17 7
363 475.31 precipitation 0.1 14400 < th dose dependent rect. 17 7
367 475.35 precipitation 0.1 14400 > th dose independent rect. 17 7
392 475.51 precipitation 0.1 14400 > th dose dependent rect. 20 22
446 476.02 precipitation 0.1 43200 > th dose dependent rect. 19 2
493 476.65 wind 7.0 43200 > th dose independent rect. 23 22
539 477.05 temperature 25.0 43200 > th dose dependent rect. 1 1
546 477.14 wind 7.0 43200 > th dose independent rect. 2 19
550 477.18 atmosphere 1000.0 43200 < th dose independent rect. 4 1
565 477.31 atmosphere 1000.0 43200 < th dose independent rect. 4 4
571 477.34 wind 7.0 43200 > th dose independent rect. 5 16
573 477.34 wind 7.0 43200 < th dose independent rect. 23 22
588 477.47 atmosphere 1000.0 43200 > th dose independent rect. 7 1
589 477.47 atmosphere 1000.0 43200 < th dose independent rect. 7 1
612 477.67 wind 7.0 43200 < th dose independent rect. 2 19
613 477.68 wind 7.0 43200 < th dose independent rect. 5 16
625 477.78 precipitation 0.1 14400 < th dose independent rect. 17 10
627 477.78 precipitation 0.1 14400 < th dose dependent rect. 17 10
648 477.96 precipitation 0.1 14400 > th dose independent rect. 17 10
655 478.00 atmosphere 1000.0 43200 > th dose independent rect. 4 4
688 478.21 wind 7.0 43200 > th dose dependent sin 21 NA
696 478.24 wind 7.0 43200 > th dose independent rect. 5 22
739 478.46 wind 7.0 43200 > th dose independent rect. 5 20
748 478.54 temperature 30.0 43200 > th dose dependent rect. 12 1
761 478.64 temperature 30.0 43200 < th dose independent rect. 9 1
764 478.65 wind 7.0 43200 < th dose independent rect. 5 22
791 478.81 wind 7.0 43200 < th dose independent rect. 5 20
882 479.16 temperature 30.0 43200 > th dose dependent rect. 9 4
917 479.24 wind 7.0 43200 > th dose independent rect. 2 23
985 479.49 humidity 80.0 14400 < th dose independent rect. 17 1