BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0144900 Os11g0144900|AK120954
         (886 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G11000.1  | chr4:6731020-6732464 FORWARD LENGTH=407             54   5e-07
AT1G03670.1  | chr1:914222-916222 REVERSE LENGTH=617               52   2e-06

>AT4G11000.1 | chr4:6731020-6732464 FORWARD LENGTH=407
          Length = 406

 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 7/102 (6%)

Query: 156 SYVSAHVLLYGLTAQVSAPDAPERVERARKYLLIFATLAATVAYQAGLSTPGGFWLGSLD 215
           S++     L GL+      D        R  +L+ A L  T  YQAGLS PGGFW  + D
Sbjct: 223 SFIEKRNSLLGLSNLSMTKDRSINASDPRNAILVVAILIVTATYQAGLSPPGGFWQDTND 282

Query: 216 NQ--HLAGDPMLRGNHPYRFMVFFY-FNTTAFVASLVTIMLL 254
            +  H+AG   +    P+ +  FF   N  AFV+SL  I+++
Sbjct: 283 GRYGHMAGQMTM----PFIYAFFFIGLNGFAFVSSLYVIIII 320



>AT1G03670.1 | chr1:914222-916222 REVERSE LENGTH=617
          Length = 616

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 6/92 (6%)

Query: 164 LYGLTAQVSAPDAPERVERARKYLLIFATLAATVAYQAGLSTPGGFWLGSLDNQHLAGDP 223
           L  LT   S+  +PER + +   L++ ATL ATV + AGL+ PGG+   +    HL    
Sbjct: 429 LIPLTVSQSSKQSPERYKDSVNTLMVTATLVATVTFAAGLTLPGGYMSSA---PHLGMAA 485

Query: 224 MLRGNHPYRFMVFFYFNTTAFVASLVTIMLLM 255
           ++   +   F VF   N  A   S+VT+M L+
Sbjct: 486 LV---NKLNFKVFLLLNNIAMCTSVVTVMALI 514



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.138    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 15,014,814
Number of extensions: 514996
Number of successful extensions: 1377
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1387
Number of HSP's successfully gapped: 2
Length of query: 886
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 779
Effective length of database: 8,173,057
Effective search space: 6366811403
Effective search space used: 6366811403
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 116 (49.3 bits)