Os11g0140100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Mitochondrial glycoprotein family protein.
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Os11g0140100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Mitochondrial glycoprotein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.17 | 0.286 | 7.96 | 0.346 | 0.259 | -0.902 | 0.137 | 4.47 | -0.227 | 17.5 | 29.55 | 1247 | -- | -- |
| 38.54 | 0.289 | 8.03 | -0.438 | 0.248 | -0.366 | -0.0647 | -- | -0.193 | 17.2 | 28.46 | 1253 | -- | -- |
| 37.21 | 0.284 | 7.96 | 0.346 | 0.26 | -0.898 | -- | 4.43 | -0.219 | 17.5 | 29.47 | 1247 | -- | -- |
| 38.01 | 0.287 | 8.06 | -0.454 | 0.256 | -0.409 | -- | -- | -0.254 | 17.4 | 30.4 | 1168 | -- | -- |
| 40.7 | 0.297 | 7.96 | 0.31 | -- | -0.896 | -- | 4.2 | -0.229 | -- | 29.43 | 1251 | -- | -- |
| 45.85 | 0.317 | 8.04 | -0.558 | 0.286 | -- | 0.173 | -- | -0.177 | 16.7 | -- | -- | -- | -- |
| 45.93 | 0.317 | 8.04 | -0.557 | 0.287 | -- | -- | -- | -0.176 | 16.6 | -- | -- | -- | -- |
| 41.32 | 0.299 | 8.05 | -0.456 | -- | -0.427 | -- | -- | -0.262 | -- | 30.51 | 1185 | -- | -- |
| 43.26 | 0.306 | 8.05 | -- | 0.26 | -0.467 | -- | -- | -0.217 | 17.6 | 30.33 | 1176 | -- | -- |
| 50.3 | 0.331 | 8.03 | -0.568 | -- | -- | -- | -- | -0.184 | -- | -- | -- | -- | -- |
| 54.11 | 0.344 | 8.02 | -- | 0.297 | -- | -- | -- | -0.114 | 16.6 | -- | -- | -- | -- |
| 46.57 | 0.318 | 8.04 | -- | -- | -0.489 | -- | -- | -0.215 | -- | 29.38 | 1230 | -- | -- |
| 58.81 | 0.358 | 8.02 | -- | -- | -- | -- | -- | -0.121 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.80 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 3 | 35.24 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 16 |
| 6 | 35.65 | temperature | 15 | 270 | > th | dose dependent | rect. | 13 | 18 |
| 7 | 35.68 | temperature | 10 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 11 | 35.83 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 20 |
| 41 | 36.27 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 16 |
| 46 | 36.32 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 18 |
| 97 | 36.88 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 5 |
| 113 | 37.00 | temperature | 30 | 270 | < th | dose independent | rect. | 17 | 9 |
| 116 | 37.01 | radiation | 1 | 270 | < th | dose dependent | rect. | 5 | 21 |
| 119 | 37.02 | temperature | 15 | 10 | > th | dose dependent | rect. | 2 | 18 |
| 134 | 37.10 | radiation | 1 | 270 | < th | dose independent | rect. | 8 | 18 |
| 149 | 37.17 | humidity | 60 | 270 | > th | dose independent | rect. | 17 | 9 |
| 168 | 37.24 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 5 |
| 203 | 37.39 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 13 |
| 207 | 37.39 | radiation | 1 | 270 | < th | dose dependent | rect. | 8 | 18 |
| 215 | 37.42 | radiation | 10 | 270 | < th | dose dependent | rect. | 15 | 11 |
| 257 | 37.54 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 7 |
| 260 | 37.54 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 23 |
| 289 | 37.61 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 290 | 37.62 | temperature | 30 | 1440 | > th | dose dependent | rect. | 9 | 8 |
| 311 | 37.63 | temperature | 30 | 1440 | > th | dose dependent | sin | 21 | NA |
| 316 | 37.63 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 451 | 37.63 | temperature | 30 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 452 | 37.63 | temperature | 30 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 514 | 37.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 646 | 37.75 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 9 |
| 653 | 37.76 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 18 |
| 666 | 37.78 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 673 | 37.79 | radiation | 40 | 14400 | > th | dose independent | rect. | 15 | 17 |
| 674 | 37.79 | humidity | 60 | 270 | > th | dose independent | rect. | 7 | 19 |
| 681 | 37.79 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 691 | 37.81 | radiation | 40 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 773 | 37.85 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 19 |
| 780 | 37.86 | temperature | 30 | 1440 | > th | dose dependent | sin | 10 | NA |
| 792 | 37.87 | radiation | 40 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 852 | 37.92 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 886 | 37.94 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 22 |
| 887 | 37.94 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 22 |
| 895 | 37.95 | temperature | 30 | 1440 | < th | dose independent | sin | 7 | NA |
| 934 | 37.99 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 20 |
| 941 | 38.00 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 978 | 38.02 | radiation | 30 | 4320 | < th | dose independent | rect. | 21 | 11 |
| 992 | 38.03 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 7 |
| 998 | 38.04 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 999 | 38.04 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 1000 | 38.04 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 17 |