BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0140100 Os11g0140100|AK067823
(210 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G41600.5 | chr2:17344747-17346701 REVERSE LENGTH=221 101 2e-22
AT5G05990.1 | chr5:1806911-1807895 REVERSE LENGTH=260 53 1e-07
AT5G02050.1 | chr5:403239-404244 REVERSE LENGTH=268 52 3e-07
AT1G15870.1 | chr1:5457153-5458245 FORWARD LENGTH=243 50 7e-07
AT4G31930.1 | chr4:15449710-15450804 REVERSE LENGTH=235 50 9e-07
AT1G80720.1 | chr1:30336289-30337347 FORWARD LENGTH=191 50 1e-06
AT2G39795.1 | chr2:16597026-16598028 FORWARD LENGTH=251 48 4e-06
>AT2G41600.5 | chr2:17344747-17346701 REVERSE LENGTH=221
Length = 220
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 105/193 (54%), Gaps = 10/193 (5%)
Query: 18 DGGVLAAVRAEIAHEXXXXXXXXXXXXXXXDIPDFSTVSDAPRGQEVLLRRR-DASEEVL 76
+G +L +++EI HE + DF D+P Q+++L+R+ D+ E+V+
Sbjct: 17 NGDLLKILQSEIRHEISHPRFQGVETG---SLGDFKLDWDSPESQDIVLKRQFDSGEKVV 73
Query: 77 VSAVLAPLRFEGEEPL--PRDALMKVFVSKPDVKPVMRFDCRAFAAEGDGGSADYDVTAV 134
VSA+L P E E+ L PR+A KV + KP + +++F CR + E GS+ +D+ +
Sbjct: 74 VSALLQPEPIELEDDLVFPREAHAKVCIKKPGLSSILQFHCRVY--ESGSGSSHFDIESA 131
Query: 135 CYHPFAGECDAGEDKYEGPEFRNLDPQLQVALKGYMVARGVNSKLASLLHHHLVEKERWQ 194
+ A Y F +DP+L AL+ Y++++GV+ L + L HL +KE+ Q
Sbjct: 132 YF--IRSFVSAPSSTYGDHFFSQVDPKLHSALEQYLISKGVSEGLTNFLLCHLNKKEQDQ 189
Query: 195 YMNWLKTLEEMFS 207
Y+NWL+ LE S
Sbjct: 190 YVNWLRRLESTMS 202
>AT5G05990.1 | chr5:1806911-1807895 REVERSE LENGTH=260
Length = 259
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 109 PVMRFDCRAFAAEGDGGSADYDVTAVCYHPFAGECDAGEDKYEGPEFRNLDPQLQVALKG 168
P + F C AF D + F + E YEGP FR LD +L+ A
Sbjct: 168 PSLEFRCTAFP--------DRIAIKDMWVTFPDDPSKDELAYEGPSFRVLDEKLRKAFHR 219
Query: 169 YMVARGVNSKLASLLHHHLVEKERWQYMNWLKTLEEM 205
Y+ RG+ + + LH +++ K+ +++ WLK+L+
Sbjct: 220 YIEIRGIKPSMINFLHEYMINKDSREHLLWLKSLKNF 256
>AT5G02050.1 | chr5:403239-404244 REVERSE LENGTH=268
Length = 267
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Query: 121 EGDGGSADYDVTA----VCYHPFAGECDAGEDK---YEGPEFRNLDPQLQVALKGYMVAR 173
+GDG ++ V+A + + + G D YEGP+F +LD LQ A Y+ R
Sbjct: 173 KGDGVCLEFGVSAYPDEIVIDSLSIKQPQGSDNDLAYEGPDFDDLDENLQKAFHRYLEIR 232
Query: 174 GVNSKLASLLHHHLVEKERWQYMNWLKTLEEMFSK 208
G+ + L ++ K+ +Y+ WLK L+ K
Sbjct: 233 GIKPSFTTFLADYVANKDSREYLQWLKDLKSFVEK 267
>AT1G15870.1 | chr1:5457153-5458245 FORWARD LENGTH=243
Length = 242
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 75/158 (47%), Gaps = 19/158 (12%)
Query: 54 TVSDAPRGQEVLLRRR-DASEEVLVSAVLAPLRFEGEEPLPRDALMKVFVSKP-DVKPVM 111
TV + P Q + LRR+ E++ + A + F+G P + S P DV+ +
Sbjct: 90 TVDERPGEQWISLRRKFGEKEDIKIEATM----FDGSVPSSKST-----TSDPEDVQLHI 140
Query: 112 RFDCRAFAAEGDGGSADY------DVTAVCYHPFAGECDAGEDKYEGPEFRNLDPQLQVA 165
F ++GDG + + D + + Y GPEF+ ++ +LQ +
Sbjct: 141 TFIVNI--SKGDGETLEIMCSAWPDTIQITKFFVRKSSQNSPNAYIGPEFQEMEDELQDS 198
Query: 166 LKGYMVARGVNSKLASLLHHHLVEKERWQYMNWLKTLE 203
+ ++ RG++ LA LH ++ K++ +Y+ W++T++
Sbjct: 199 VYRFLEERGISDDLAEFLHQYMKNKDKAEYIRWMETVK 236
>AT4G31930.1 | chr4:15449710-15450804 REVERSE LENGTH=235
Length = 234
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 35/59 (59%)
Query: 150 YEGPEFRNLDPQLQVALKGYMVARGVNSKLASLLHHHLVEKERWQYMNWLKTLEEMFSK 208
Y GP F NL Q A++ ++ RG++++L LH +++ K+R + + WL+ L S+
Sbjct: 176 YMGPNFGNLKYDFQTAIREFLRVRGIDAELCFFLHEYMMNKDRIELIQWLRKLNSFISQ 234
>AT1G80720.1 | chr1:30336289-30337347 FORWARD LENGTH=191
Length = 190
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 37/61 (60%)
Query: 143 CDAGEDKYEGPEFRNLDPQLQVALKGYMVARGVNSKLASLLHHHLVEKERWQYMNWLKTL 202
+ Y GPEF LD QLQ AL ++ RG++ +LA LH ++ K + +Y+ W++++
Sbjct: 124 INTSPSSYGGPEFEELDDQLQDALYQFLEERGISDELAVFLHRYMKNKGKAEYVRWMESV 183
Query: 203 E 203
+
Sbjct: 184 K 184
>AT2G39795.1 | chr2:16597026-16598028 FORWARD LENGTH=251
Length = 250
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 65/164 (39%), Gaps = 20/164 (12%)
Query: 55 VSDAPRGQEVLLRRRDASEEVLVSAVLAPL--------RFEGEEPLPRDALMKVFVSKPD 106
+ D P Q V L R E + V + L + E P ++ V
Sbjct: 97 IEDKPGNQNVTLTRDYNGEHIKVVVSMPSLVSDENDDDDDDDEGPSNESSIPLVVTVTKK 156
Query: 107 VKPVMRFDCRAFAAEGDGGSADYDVTAVCYHPFAGECDAGEDKY--EGPEFRNLDPQLQV 164
+ F C AF E D +V HP D+ ED+ EGP+F +LD L+
Sbjct: 157 SGLTLEFSCMAFPDE-----IAIDALSV-KHP----GDSLEDQLANEGPDFEDLDENLKK 206
Query: 165 ALKGYMVARGVNSKLASLLHHHLVEKERWQYMNWLKTLEEMFSK 208
++ RGV + + LH ++ K +Y WLK ++E +
Sbjct: 207 TFYKFLEIRGVKASTTNFLHEYMTRKVNREYFLWLKNVKEFMEQ 250
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.136 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,901,542
Number of extensions: 149542
Number of successful extensions: 335
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 334
Number of HSP's successfully gapped: 7
Length of query: 210
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 116
Effective length of database: 8,529,465
Effective search space: 989417940
Effective search space used: 989417940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)