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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0139600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Scarecrow-like 9 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3 (0.0259) R2 : 9.61e-06
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00361 (0.0546) R2dN8 : 1.24e-05 R2N8 : 9.61e-06
σ : 0.488
deviance : 109.5
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
81.32 0.424 3.06 -0.363 0.0721 11.9 0.165 -52.6 -0.133 13.3 25.03 275 1.98 1.12
92.55 0.448 3.02 -0.43 0.0616 4.33 -0.296 -- -0.108 21.1 24.92 163 3.63 1.06
81.42 0.42 3.06 -0.358 0.0734 11.9 -- -52.7 -0.129 14 25.02 275 1.97 1.13
82.78 0.424 3 -0.0276 0.0311 5.03 -- -- -0.0162 8.08 25.11 129 3.93 0.752
81.7 0.421 3.07 -0.365 -- 12.3 -- -54.7 -0.129 -- 25.03 273 2 1.16
108.71 0.489 3 0.00318 0.123 -- -0.0667 -- -0.00613 5.46 -- -- -- --
108.71 0.488 3 0.00319 0.123 -- -- -- -0.00576 5.72 -- -- -- --
82.84 0.424 3.01 -0.027 -- 4.97 -- -- -0.0181 -- 25.1 133 3.92 0.781
82.69 0.424 3 -- 0.0446 4.98 -- -- -0.015 6.18 25.08 124 3.96 0.7
109.5 0.489 3 0.00707 -- -- -- -- -0.00283 -- -- -- -- --
108.71 0.488 3 -- 0.124 -- -- -- -0.00611 5.72 -- -- -- --
82.77 0.424 3.01 -- -- 5.04 -- -- -0.0153 -- 25.07 127 3.97 0.715
109.5 0.488 3 -- -- -- -- -- -0.00361 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 81.40 temperature 25.0 270 > th dose dependent rect. 2 1
2 83.23 atmosphere 1000.0 10 < th dose dependent rect. 4 2
4 83.25 atmosphere 1000.0 10 < th dose independent rect. 4 2
8 83.51 atmosphere 1000.0 90 < th dose independent rect. 4 1
28 83.99 temperature 20.0 30 > th dose dependent rect. 2 1
29 84.15 temperature 20.0 30 > th dose independent rect. 2 1
31 84.16 wind 3.0 30 < th dose dependent rect. 2 1
32 84.23 atmosphere 1005.0 30 > th dose independent rect. 2 1
35 84.30 atmosphere 1000.0 30 > th dose dependent rect. 2 1
38 84.36 wind 3.0 30 < th dose independent rect. 2 1
42 84.50 humidity 80.0 30 > th dose independent rect. 2 1
45 84.57 humidity 50.0 30 > th dose dependent rect. 2 1
47 84.58 temperature 10.0 30 > th dose independent rect. 2 1
49 84.58 temperature 30.0 30 < th dose independent rect. 2 1
50 84.58 humidity 50.0 30 > th dose independent rect. 2 1
54 84.58 atmosphere 1010.0 30 < th dose independent rect. 2 1
56 84.58 radiation 1.0 30 < th dose independent rect. 2 1
61 84.58 precipitation 0.1 30 < th dose independent rect. 2 1
62 84.58 temperature 10.0 30 > th dose independent rect. 3 23
64 84.58 radiation 1.0 30 < th dose dependent rect. 2 1
69 84.58 precipitation 0.1 30 < th dose dependent rect. 2 1
75 84.77 temperature 25.0 270 > th dose independent rect. 2 1
77 85.22 temperature 25.0 30 > th dose dependent rect. 5 1
78 85.30 atmosphere 1015.0 30 < th dose dependent rect. 2 1
81 85.96 temperature 30.0 30 < th dose dependent rect. 2 1
94 86.95 wind 1.0 30 > th dose independent rect. 2 1
95 87.01 wind 1.0 10 < th dose dependent rect. 5 1
112 88.19 wind 1.0 10 < th dose dependent rect. 5 5
140 88.40 temperature 25.0 30 > th dose independent rect. 5 1
154 90.42 radiation 10.0 14400 < th dose dependent rect. 3 1
161 90.46 wind 9.0 1440 < th dose independent rect. 3 1
162 90.46 temperature 10.0 1440 > th dose independent rect. 3 1
165 90.46 temperature 30.0 1440 < th dose independent rect. 3 1
169 90.46 humidity 50.0 1440 > th dose independent rect. 3 1
178 90.46 atmosphere 995.0 1440 > th dose independent rect. 3 1
179 90.46 radiation 1.0 1440 < th dose independent rect. 3 1
199 90.46 temperature 10.0 1440 > th dose independent rect. 4 23
202 90.46 radiation 1.0 1440 < th dose dependent rect. 3 1
227 92.45 atmosphere 1000.0 270 < th dose independent rect. 2 1
229 92.45 atmosphere 1000.0 270 < th dose dependent rect. 2 1
237 92.68 wind 9.0 30 < th dose independent rect. 3 23
279 93.91 precipitation 0.1 30 < th dose independent rect. 3 23
280 93.91 precipitation 0.1 30 < th dose dependent rect. 3 23
281 93.94 atmosphere 995.0 30 > th dose independent rect. 3 23
319 95.30 wind 1.0 10 < th dose independent rect. 5 22
337 95.78 wind 1.0 10 < th dose dependent rect. 5 13
341 95.80 wind 1.0 10 < th dose dependent rect. 5 11
380 96.97 humidity 50.0 30 > th dose independent rect. 3 23
395 97.55 atmosphere 995.0 720 < th dose independent rect. 18 1
417 97.55 atmosphere 995.0 720 < th dose dependent rect. 18 1
463 98.01 wind 1.0 30 < th dose independent rect. 24 3
472 98.28 wind 1.0 30 < th dose dependent rect. 5 22
474 98.32 atmosphere 995.0 1440 > th dose independent rect. 3 14
510 99.17 wind 1.0 30 < th dose independent rect. 2 4
512 99.23 wind 1.0 30 > th dose independent rect. 3 23
513 99.24 atmosphere 995.0 1440 > th dose independent rect. 3 18
520 99.39 wind 1.0 30 < th dose independent rect. 24 6
552 99.64 atmosphere 995.0 1440 > th dose independent rect. 16 15
565 99.77 wind 1.0 10 > th dose independent rect. 5 23
572 99.84 wind 1.0 10 > th dose independent sin 8 NA
605 100.14 humidity 90.0 270 < th dose independent rect. 1 3
608 100.16 atmosphere 995.0 1440 > th dose independent rect. 16 12
610 100.17 wind 1.0 10 > th dose independent no NA NA
612 100.17 wind 1.0 10 < th dose independent rect. 21 6
616 100.18 atmosphere 995.0 1440 > th dose independent rect. 16 5
626 100.25 atmosphere 995.0 1440 > th dose independent rect. 16 1
635 100.31 humidity 90.0 270 < th dose independent rect. 2 1
641 100.34 wind 1.0 30 < th dose independent rect. 24 13
662 100.41 radiation 40.0 90 > th dose independent rect. 15 1
680 100.41 radiation 40.0 90 > th dose dependent rect. 15 1
698 100.42 atmosphere 995.0 1440 > th dose independent rect. 14 7
707 100.44 wind 1.0 10 > th dose independent rect. 16 23
708 100.44 radiation 20.0 10 > th dose dependent rect. 16 1
766 100.51 atmosphere 995.0 1440 > th dose independent rect. 3 12
792 100.54 atmosphere 995.0 1440 > th dose independent rect. 12 9
823 100.61 radiation 20.0 10 > th dose independent rect. 16 1
859 100.63 wind 3.0 30 < th dose dependent rect. 2 4
995 100.95 temperature 30.0 30 < th dose independent rect. 3 23