BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0139600 Os11g0139600|AK073051
(171 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G29065.1 | chr2:12485049-12486941 FORWARD LENGTH=631 108 1e-24
AT5G59450.1 | chr5:23974808-23976640 FORWARD LENGTH=611 108 1e-24
AT1G07520.1 | chr1:2309718-2311805 REVERSE LENGTH=696 106 7e-24
AT1G07530.1 | chr1:2313828-2316137 REVERSE LENGTH=770 105 9e-24
AT3G46600.1 | chr3:17158048-17159799 FORWARD LENGTH=584 104 2e-23
AT2G29060.1 | chr2:12481991-12484075 FORWARD LENGTH=695 101 2e-22
AT2G37650.1 | chr2:15792623-15794779 FORWARD LENGTH=719 99 2e-21
>AT2G29065.1 | chr2:12485049-12486941 FORWARD LENGTH=631
Length = 630
Score = 108 bits (271), Expect = 1e-24, Method: Composition-based stats.
Identities = 63/166 (37%), Positives = 81/166 (48%), Gaps = 3/166 (1%)
Query: 2 DESGVFDDPSPRDTVLGSIRDMRPAVFVQAVVNGAHGAPFFPTRFREALFFFSALFDMLG 61
DE+G ++ PRD VL IR+M P VF+ A+VNG+ APFF +RF+EA++ +SALFDM
Sbjct: 467 DETGS-EENCPRDAVLKLIRNMNPDVFIHAIVNGSFNAPFFISRFKEAVYHYSALFDMFD 525
Query: 62 ATTPEEGSHXXXXXXXXXXXXXXXXXXXXXXXXXXXRPETYRRWQARNRRAGLRQAAXXX 121
+T P + RPETYR+WQ R RAG +Q
Sbjct: 526 STLPRDNKE-RIRFEREFYGREAMNVIACEEADRVERPETYRQWQVRMVRAGFKQKTIKP 584
Query: 122 XXXXXXXXXXXX-XXXXXXXXXXDAGWLLQGWKGRILYAHSAWVVA 166
++ WLLQGWKGR LYA S WV A
Sbjct: 585 ELVELFRGKLKKWRYHKDFVVDENSKWLLQGWKGRTLYASSCWVPA 630
>AT5G59450.1 | chr5:23974808-23976640 FORWARD LENGTH=611
Length = 610
Score = 108 bits (271), Expect = 1e-24, Method: Composition-based stats.
Identities = 62/167 (37%), Positives = 78/167 (46%), Gaps = 3/167 (1%)
Query: 2 DESGVFDDPSPRDTVLGSIRDMRPAVFVQAVVNGAHGAPFFPTRFREALFFFSALFDMLG 61
DE+ D SPRDTVL RD+ P +FV A +NG + +PFF TRFREALF +S+LFDM
Sbjct: 437 DETVSLD--SPRDTVLKLFRDINPDLFVFAEINGMYNSPFFMTRFREALFHYSSLFDMFD 494
Query: 62 ATTPEEGSHXXXXXXXXXXXXXXXXXXXX-XXXXXXXRPETYRRWQARNRRAGLRQAAXX 120
T E + RPETY++W+ R RAG + A
Sbjct: 495 TTIHAEDEYKNRSLLERELLVRDAMSVISCEGAERFARPETYKQWRVRILRAGFKPATIS 554
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXDAGWLLQGWKGRILYAHSAWVVAE 167
D W+LQGWKGR++YA S W AE
Sbjct: 555 KQIMKEAKEIVRKRYHRDFVIDSDNNWMLQGWKGRVIYAFSCWKPAE 601
>AT1G07520.1 | chr1:2309718-2311805 REVERSE LENGTH=696
Length = 695
Score = 106 bits (264), Expect = 7e-24, Method: Composition-based stats.
Identities = 60/158 (37%), Positives = 75/158 (47%), Gaps = 2/158 (1%)
Query: 8 DDPSPRDTVLGSIRDMRPAVFVQAVVNGAHGAPFFPTRFREALFFFSALFDMLGATTPEE 67
++ PRD L IRDM P VF+ + VNG+ APFF TRF+EALF +SALFD+ GAT +E
Sbjct: 537 EEDCPRDGFLKLIRDMNPNVFLSSTVNGSFNAPFFTTRFKEALFHYSALFDLFGATLSKE 596
Query: 68 GSHXXXXXXXXXXXXXXXXXXXXXXXXXXXRPETYRRWQARNRRAGLRQAAXXXXXXXXX 127
RPETY++WQ R RAG +Q
Sbjct: 597 NPERIHFEGEFYGREVMNVIACEGVDRVE-RPETYKQWQVRMIRAGFKQKPVEAELVQLF 655
Query: 128 XXXXXX-XXXXXXXXXXDAGWLLQGWKGRILYAHSAWV 164
D+ W LQGWKGRIL++ S WV
Sbjct: 656 REKMKKWGYHKDFVLDEDSNWFLQGWKGRILFSSSCWV 693
>AT1G07530.1 | chr1:2313828-2316137 REVERSE LENGTH=770
Length = 769
Score = 105 bits (263), Expect = 9e-24, Method: Composition-based stats.
Identities = 60/154 (38%), Positives = 73/154 (47%), Gaps = 1/154 (0%)
Query: 11 SPRDTVLGSIRDMRPAVFVQAVVNGAHGAPFFPTRFREALFFFSALFDMLGATTPEEGSH 70
SPRD VL IR + P VF+ A+++G + APFF TRFREALF +SA+FDM + E
Sbjct: 613 SPRDAVLKLIRKINPNVFIPAILSGNYNAPFFVTRFREALFHYSAVFDMCDSKLARE-DE 671
Query: 71 XXXXXXXXXXXXXXXXXXXXXXXXXXXRPETYRRWQARNRRAGLRQAAXXXXXXXXXXXX 130
RPETY++WQAR RAG RQ
Sbjct: 672 MRLMYEKEFYGREIVNVVACEGTERVERPETYKQWQARLIRAGFRQLPLEKELMQNLKLK 731
Query: 131 XXXXXXXXXXXXXDAGWLLQGWKGRILYAHSAWV 164
+ WLLQGWKGRI+YA S WV
Sbjct: 732 IENGYDKNFDVDQNGNWLLQGWKGRIVYASSLWV 765
>AT3G46600.1 | chr3:17158048-17159799 FORWARD LENGTH=584
Length = 583
Score = 104 bits (260), Expect = 2e-23, Method: Composition-based stats.
Identities = 60/157 (38%), Positives = 72/157 (45%), Gaps = 1/157 (0%)
Query: 11 SPRDTVLGSIRDMRPAVFVQAVVNGAHGAPFFPTRFREALFFFSALFDMLGATTPEEGSH 70
SPRDT L RD+ P +FV A +NG + +PFF TRFREALF S+LFDM TT E +
Sbjct: 427 SPRDTALKLFRDINPDLFVFAEINGTYNSPFFLTRFREALFHCSSLFDMY-ETTLSEDDN 485
Query: 71 XXXXXXXXXXXXXXXXXXXXXXXXXXXRPETYRRWQARNRRAGLRQAAXXXXXXXXXXXX 130
RPETY++WQ R RAG R A
Sbjct: 486 CRTLVERELIIRDAMSVIACEGSERFARPETYKQWQVRILRAGFRPAKLSKQIVKDGKEI 545
Query: 131 XXXXXXXXXXXXXDAGWLLQGWKGRILYAHSAWVVAE 167
D W+ QGWKGR+LYA S W A+
Sbjct: 546 VKERYHKDFVIDNDNHWMFQGWKGRVLYAVSCWKPAK 582
>AT2G29060.1 | chr2:12481991-12484075 FORWARD LENGTH=695
Length = 694
Score = 101 bits (252), Expect = 2e-22, Method: Composition-based stats.
Identities = 58/155 (37%), Positives = 72/155 (46%), Gaps = 2/155 (1%)
Query: 11 SPRDTVLGSIRDMRPAVFVQAVVNGAHGAPFFPTRFREALFFFSALFDMLGATTPEEGSH 70
SPRDTVL IR ++P VF+ +++G++ APFF TRFRE LF +S+LFDM E
Sbjct: 539 SPRDTVLKLIRKIKPDVFIPGILSGSYNAPFFVTRFREVLFHYSSLFDMCDTNLTREDP- 597
Query: 71 XXXXXXXXXXXXXXXXXXXXXXXXXXXRPETYRRWQARNRRAGLRQAAXXXXXXXXXXXX 130
RPE+Y++WQAR RAG RQ
Sbjct: 598 MRVMFEKEFYGREIMNVVACEGTERVERPESYKQWQARAMRAGFRQIPLEKELVQKLKLM 657
Query: 131 XXXXXX-XXXXXXXDAGWLLQGWKGRILYAHSAWV 164
D WLLQGWKGRI+Y S WV
Sbjct: 658 VESGYKPKEFDVDQDCHWLLQGWKGRIVYGSSIWV 692
>AT2G37650.1 | chr2:15792623-15794779 FORWARD LENGTH=719
Length = 718
Score = 98.6 bits (244), Expect = 2e-21, Method: Composition-based stats.
Identities = 58/153 (37%), Positives = 68/153 (44%), Gaps = 1/153 (0%)
Query: 11 SPRDTVLGSIRDMRPAVFVQAVVNGAHGAPFFPTRFREALFFFSALFDMLGATTPEEGSH 70
S RDTVL I + P +FV +VNGA+ APFF TRFREALF FS++FDML P E
Sbjct: 561 SCRDTVLNLIGKINPDLFVFGIVNGAYNAPFFVTRFREALFHFSSIFDMLETIVPRE-DE 619
Query: 71 XXXXXXXXXXXXXXXXXXXXXXXXXXXRPETYRRWQARNRRAGLRQAAXXXXXXXXXXXX 130
RPETY++W R R+GL Q
Sbjct: 620 ERMFLEMEVFGREALNVIACEGWERVERPETYKQWHVRAMRSGLVQVPFDPSIMKTSLHK 679
Query: 131 XXXXXXXXXXXXXDAGWLLQGWKGRILYAHSAW 163
D WLLQGWKGR + A S W
Sbjct: 680 VHTFYHKDFVIDQDNRWLLQGWKGRTVMALSVW 712
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.137 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,698,876
Number of extensions: 67762
Number of successful extensions: 163
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 10
Length of query: 171
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 80
Effective length of database: 8,611,713
Effective search space: 688937040
Effective search space used: 688937040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 108 (46.2 bits)