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Os11g0136800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Dual specificity protein phosphatase 19 (EC 3.1.3.48) (EC 3.1.3.16) (Stress-activated protein kinase pathway-regulating phosphatase 1) (Protein phosphatase SKRP1). Splice isoform 2.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.46 (0.0132) R2 : 0.76
β1 : 1 (0.0483) R2dD : 0.233 R2D : 0.167
β2 : 1.04 (0.0324) R2dC : 0.547 R2C : 0.511
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.245 (0.0282) R2dN8 : 0.0531 R2N8 : -0.00324
σ : 0.248
deviance : 28.09
__
_____
C
peak time of C : 14.5
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
23.75 0.229 8.44 1.03 1.01 -0.364 0.381 0.251 0.312 14.7 8.027 2731 -- --
23.82 0.227 8.45 1.01 1 -0.356 0.363 -- 0.3 14.7 7.104 2725 -- --
24.23 0.229 8.44 1.03 1 -0.379 -- 0.2 0.318 14.7 2.443 2727 -- --
24.28 0.229 8.44 1.01 1 -0.373 -- -- 0.307 14.7 2.91 2727 -- --
65.04 0.378 8.46 0.938 -- 0.906 -- 0.627 0.227 -- -0.08093 2703 -- --
27.53 0.246 8.46 0.989 1.04 -- 0.396 -- 0.242 14.5 -- -- -- --
28.09 0.248 8.46 1 1.04 -- -- -- 0.245 14.5 -- -- -- --
65.94 0.38 8.46 0.958 -- 0.903 -- -- 0.229 -- -0.08093 2703 -- --
44.03 0.309 8.46 -- 1.03 -0.552 -- -- 0.23 14.5 5.329 30752 -- --
92.11 0.448 8.46 0.955 -- -- -- -- 0.219 -- -- -- -- --
54.43 0.345 8.48 -- 1.02 -- -- -- 0.133 14.5 -- -- -- --
90.15 0.444 8.49 -- -- 0.901 -- -- 0.123 -- -0.08093 2703 -- --
116.19 0.503 8.49 -- -- -- -- -- 0.113 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 22.98 precipitation 0.1 10 < th dose independent rect. 3 3
2 22.98 wind 7.0 10 < th dose dependent rect. 3 3
3 22.98 precipitation 0.1 10 < th dose dependent rect. 3 3
5 23.01 wind 3.0 43200 < th dose dependent rect. 4 1
7 23.03 wind 1.0 43200 > th dose independent rect. 3 4
8 23.06 radiation 10.0 10 < th dose independent rect. 3 3
9 23.07 precipitation 0.1 10 < th dose independent rect. 6 21
10 23.07 precipitation 0.1 10 < th dose dependent rect. 6 21
11 23.10 wind 5.0 10 < th dose independent rect. 3 3
14 23.11 wind 1.0 43200 > th dose dependent rect. 1 2
15 23.12 atmosphere 995.0 10 > th dose independent rect. 6 21
16 23.13 wind 7.0 90 < th dose dependent rect. 3 2
25 23.17 wind 1.0 43200 < th dose independent rect. 3 4
27 23.18 wind 1.0 43200 > th dose independent rect. 1 6
30 23.19 temperature 10.0 10 > th dose independent rect. 3 3
32 23.19 temperature 30.0 10 < th dose independent rect. 3 3
33 23.19 humidity 50.0 10 > th dose independent rect. 3 3
36 23.19 atmosphere 995.0 10 > th dose independent rect. 3 3
37 23.19 atmosphere 1010.0 10 < th dose independent rect. 3 3
43 23.19 temperature 10.0 10 > th dose independent rect. 6 21
47 23.20 wind 7.0 43200 < th dose dependent rect. 4 2
54 23.22 wind 9.0 90 < th dose dependent rect. 6 20
62 23.25 wind 7.0 43200 < th dose dependent rect. 1 5
65 23.26 wind 9.0 43200 < th dose dependent rect. 1 2
66 23.26 wind 1.0 43200 > th dose dependent rect. 1 5
83 23.27 wind 9.0 10 < th dose independent rect. 6 21
88 23.28 atmosphere 1015.0 90 < th dose dependent rect. 3 2
105 23.29 temperature 30.0 90 < th dose dependent rect. 3 2
106 23.29 radiation 10.0 90 < th dose dependent rect. 3 2
114 23.30 radiation 40.0 10 < th dose dependent rect. 3 3
123 23.33 wind 1.0 43200 > th dose dependent rect. 4 2
124 23.33 wind 1.0 43200 < th dose dependent rect. 3 4
129 23.35 humidity 50.0 10 > th dose dependent rect. 3 3
140 23.38 humidity 50.0 90 > th dose dependent rect. 3 2
146 23.39 temperature 10.0 10 > th dose dependent rect. 3 3
150 23.40 wind 1.0 270 > th dose independent rect. 1 3
198 23.45 radiation 30.0 1440 < th dose independent rect. 3 4
200 23.45 wind 5.0 14400 < th dose dependent rect. 14 1
205 23.47 temperature 10.0 10 > th dose dependent rect. 6 21
244 23.51 wind 9.0 1440 < th dose independent rect. 3 4
245 23.51 temperature 10.0 1440 > th dose independent rect. 3 4
248 23.51 temperature 30.0 1440 < th dose independent rect. 3 4
252 23.51 humidity 50.0 1440 > th dose independent rect. 3 4
257 23.51 atmosphere 995.0 1440 > th dose independent rect. 3 4
263 23.51 temperature 10.0 1440 > th dose independent rect. 7 20
287 23.54 wind 3.0 14400 < th dose independent rect. 14 1
308 23.55 wind 3.0 14400 > th dose independent rect. 14 1
330 23.56 humidity 70.0 43200 < th dose independent rect. 18 1
352 23.58 atmosphere 1015.0 270 < th dose dependent rect. 1 4
353 23.58 temperature 30.0 1440 > th dose dependent rect. 18 15
362 23.60 humidity 70.0 43200 < th dose independent rect. 17 16
373 23.62 wind 1.0 14400 > th dose dependent rect. 14 1
381 23.63 atmosphere 1015.0 10 < th dose dependent rect. 3 3
419 23.66 humidity 80.0 1440 > th dose independent rect. 21 1
428 23.66 atmosphere 1005.0 10 > th dose independent rect. 3 3
438 23.66 radiation 10.0 4320 < th dose dependent rect. 7 1
451 23.67 humidity 70.0 43200 < th dose independent rect. 18 11
462 23.68 humidity 70.0 43200 < th dose independent rect. 18 9
522 23.72 humidity 80.0 720 > th dose dependent rect. 22 1
531 23.72 radiation 1.0 90 < th dose dependent rect. 3 14
545 23.74 radiation 1.0 90 < th dose independent rect. 3 14
549 23.74 humidity 60.0 720 > th dose dependent rect. 20 5
551 23.75 radiation 20.0 14400 > th dose independent rect. 7 1
568 23.76 humidity 70.0 14400 > th dose independent rect. 19 1
574 23.76 atmosphere 995.0 10 > th dose dependent rect. 3 3
618 23.79 atmosphere 1015.0 1440 < th dose independent rect. 4 3
642 23.80 radiation 10.0 1440 < th dose independent rect. 8 2
663 23.82 radiation 10.0 4320 < th dose dependent rect. 7 3
693 23.84 wind 3.0 90 < th dose independent rect. 6 20
702 23.84 wind 5.0 14400 < th dose dependent rect. 14 9
706 23.85 wind 3.0 14400 > th dose independent rect. 13 11
708 23.85 atmosphere 1015.0 10 < th dose independent rect. 6 21
716 23.85 radiation 1.0 270 < th dose dependent rect. 24 19
717 23.86 precipitation 0.1 43200 < th dose independent rect. 15 1
720 23.86 precipitation 0.1 43200 < th dose dependent rect. 15 1
721 23.86 wind 1.0 43200 < th dose dependent rect. 2 8
726 23.87 wind 5.0 14400 < th dose dependent rect. 14 3
733 23.88 precipitation 0.1 43200 > th dose independent rect. 15 1
742 23.88 precipitation 0.1 43200 > th dose dependent rect. 15 1
769 23.90 humidity 70.0 43200 > th dose independent rect. 17 16
781 23.90 wind 9.0 90 < th dose dependent rect. 16 10
866 23.94 wind 3.0 14400 < th dose independent rect. 13 10
868 23.94 radiation 10.0 90 < th dose independent rect. 6 20
869 23.94 temperature 30.0 1440 > th dose dependent rect. 18 1
897 23.95 humidity 70.0 43200 > th dose independent rect. 18 14
900 23.95 humidity 70.0 43200 > th dose dependent rect. 19 2
901 23.95 temperature 30.0 10 < th dose dependent rect. 3 3
911 23.96 humidity 80.0 14400 < th dose dependent rect. 19 1
941 23.98 radiation 10.0 1440 < th dose dependent rect. 24 10
963 24.00 wind 3.0 14400 < th dose independent rect. 13 4
966 24.00 wind 1.0 14400 > th dose dependent rect. 16 1
970 24.00 wind 1.0 14400 > th dose dependent rect. 14 3
977 24.00 radiation 10.0 1440 < th dose dependent rect. 2 8
983 24.00 atmosphere 995.0 10 > th dose dependent rect. 6 21
986 24.01 radiation 10.0 1440 > th dose independent rect. 8 2
989 24.01 wind 3.0 14400 > th dose independent rect. 13 4
993 24.01 radiation 10.0 1440 < th dose independent rect. 15 19
995 24.01 wind 5.0 14400 < th dose dependent rect. 19 1