BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0136800 Os11g0136800|AK063731
         (356 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G18593.1  | chr4:10238154-10238698 FORWARD LENGTH=143          148   4e-36
AT3G23610.3  | chr3:8478280-8479651 FORWARD LENGTH=229             73   2e-13
AT3G06110.2  | chr3:1843517-1844577 FORWARD LENGTH=168             66   3e-11
AT5G23720.1  | chr5:7998309-8002594 FORWARD LENGTH=930             60   2e-09

>AT4G18593.1 | chr4:10238154-10238698 FORWARD LENGTH=143
          Length = 142

 Score =  148 bits (374), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 69/123 (56%), Positives = 90/123 (73%), Gaps = 8/123 (6%)

Query: 231 NSSTQD-LPNKQTQQTAYRCKKCRRIVAVQGNVVSHTPGEGESCFQWQNKRKGERSYSKE 289
           NSS Q+ LP  Q     YRCKKCRRIVA++ N+V H PG+GE CF W+ KR G    S++
Sbjct: 13  NSSLQESLPKPQV---MYRCKKCRRIVAIEENIVPHEPGKGEECFAWK-KRSGN---SEQ 65

Query: 290 QDCSSLFVEPLKWMTPVEDGALEGKLSCIHCGARLGYFNWSGIQCNCGSWITPAFQISKS 349
             CSS+FVEP+KWM  + DG +E KL C  C  RLGYFNW+G+QC+CG+W+ PAFQ++KS
Sbjct: 66  VQCSSIFVEPMKWMQTIHDGMVEEKLLCFGCNGRLGYFNWAGMQCSCGAWVNPAFQLNKS 125

Query: 350 KVD 352
           ++D
Sbjct: 126 RID 128



>AT3G23610.3 | chr3:8478280-8479651 FORWARD LENGTH=229
          Length = 228

 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 1/89 (1%)

Query: 98  AVPLRDTEEENLLDHLEPCLDFIDEGRKEG-NVLVHCFAGVSRSATIIVAYLMRTXXXXX 156
            V + D E+ NL  + + C+DFIDE +++G +VLVHCF G SRS TI+VAYLM+      
Sbjct: 99  VVRVVDKEDTNLEMYFDECVDFIDEAKRQGGSVLVHCFVGKSRSVTIVVAYLMKKHGMTL 158

Query: 157 XXXXXXXXXVNESACPNDGFLEQLKLFEE 185
                        A PN GF+ QL+  E+
Sbjct: 159 AQALQHVKSKRPVASPNAGFIRQLQDLEK 187



>AT3G06110.2 | chr3:1843517-1844577 FORWARD LENGTH=168
          Length = 167

 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 1/88 (1%)

Query: 99  VPLRDTEEENLLDHLEPCLDFIDEG-RKEGNVLVHCFAGVSRSATIIVAYLMRTXXXXXX 157
           + + D  E +L  + + C  FID+  +  G VLVHCF G+SRS TI+VAYLM+       
Sbjct: 74  IEVVDRSETDLTVYFDECYSFIDQAIQSGGGVLVHCFMGMSRSVTIVVAYLMKKHGMGFS 133

Query: 158 XXXXXXXXVNESACPNDGFLEQLKLFEE 185
                       A PN GF+ QL+ FE+
Sbjct: 134 KAMELVRSRRHQAYPNPGFISQLQQFEK 161



>AT5G23720.1 | chr5:7998309-8002594 FORWARD LENGTH=930
          Length = 929

 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 101 LRDTEEENLLDHLEPCLDFIDEGRKEG-NVLVHCFAGVSRSATIIVAYLMRTXXXXXXXX 159
           + D E+ N+    +  LDFI  G + G  +LVHCF G SRSAT+++AYLM          
Sbjct: 759 ITDDEDSNIESIFQEALDFIKHGEETGGKILVHCFEGRSRSATVVLAYLMLQKKLTLLEA 818

Query: 160 XXXXXXVNESACPNDGF 176
                 V+  A PNDGF
Sbjct: 819 WSKLRKVHRRAQPNDGF 835



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,010,791
Number of extensions: 282519
Number of successful extensions: 676
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 673
Number of HSP's successfully gapped: 4
Length of query: 356
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 256
Effective length of database: 8,364,969
Effective search space: 2141432064
Effective search space used: 2141432064
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)