Os11g0135900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Major facilitator superfamily protein.
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Os11g0135900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Major facilitator superfamily protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 73.22 | 0.402 | 10.2 | -0.372 | 2.11 | -0.847 | 1.3 | -0.192 | -0.0265 | 7.56 | 20.5 | 1246 | -- | -- |
| 73.3 | 0.399 | 10.2 | -0.335 | 2.1 | -0.823 | 1.31 | -- | -0.0178 | 7.56 | 20.59 | 1245 | -- | -- |
| 77.82 | 0.411 | 10.2 | -0.331 | 2.11 | -0.884 | -- | -0.218 | -0.0216 | 7.51 | 20.56 | 1284 | -- | -- |
| 77.92 | 0.411 | 10.2 | -0.298 | 2.11 | -0.857 | -- | -- | -0.0157 | 7.51 | 20.52 | 1290 | -- | -- |
| 292.99 | 0.797 | 10.2 | -0.176 | -- | -0.939 | -- | -0.0846 | 0.156 | -- | 21.9 | 713 | -- | -- |
| 89.33 | 0.443 | 10.3 | -0.679 | 2.11 | -- | 1.41 | -- | -0.206 | 7.66 | -- | -- | -- | -- |
| 94.89 | 0.456 | 10.3 | -0.645 | 2.11 | -- | -- | -- | -0.209 | 7.61 | -- | -- | -- | -- |
| 204.39 | 0.666 | 10.2 | -0.171 | -- | -1.54 | -- | -- | 0.236 | -- | 26.37 | 543 | -- | -- |
| 79.83 | 0.416 | 10.2 | -- | 2.12 | -0.95 | -- | -- | 0.0436 | 7.55 | 20.51 | 1302 | -- | -- |
| 334.96 | 0.855 | 10.3 | -0.615 | -- | -- | -- | -- | -0.177 | -- | -- | -- | -- | -- |
| 105.84 | 0.481 | 10.3 | -- | 2.11 | -- | -- | -- | -0.137 | 7.63 | -- | -- | -- | -- |
| 204.15 | 0.665 | 10.2 | -- | -- | -1.6 | -- | -- | 0.246 | -- | 26.3 | 550 | -- | -- |
| 344.94 | 0.867 | 10.3 | -- | -- | -- | -- | -- | -0.109 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 69.80 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 18 |
| 17 | 71.25 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 10 |
| 22 | 71.40 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 11 |
| 23 | 71.41 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 7 |
| 24 | 71.42 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 5 |
| 32 | 71.48 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 5 |
| 66 | 71.79 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 3 |
| 140 | 72.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 13 |
| 148 | 72.61 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 9 |
| 149 | 72.61 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 15 |
| 168 | 72.73 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 11 |
| 184 | 72.85 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 10 |
| 208 | 72.97 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 241 | 73.16 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 256 | 73.23 | temperature | 20 | 270 | > th | dose dependent | sin | 0 | NA |
| 293 | 73.35 | temperature | 10 | 720 | > th | dose dependent | sin | 5 | NA |
| 321 | 73.47 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 17 |
| 339 | 73.55 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 11 |
| 581 | 74.11 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 6 |
| 585 | 74.12 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 4 |
| 763 | 74.48 | temperature | 30 | 720 | < th | dose dependent | sin | 4 | NA |
| 795 | 74.54 | temperature | 30 | 270 | < th | dose dependent | sin | 23 | NA |
| 820 | 74.59 | temperature | 25 | 720 | < th | dose dependent | sin | 1 | NA |
| 822 | 74.59 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 876 | 74.67 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 21 |
| 963 | 74.82 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |