BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0135900 Os11g0135900|AK064297
(490 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G13750.1 | chr5:4438318-4441289 FORWARD LENGTH=479 514 e-146
AT3G43790.3 | chr3:15655443-15658848 FORWARD LENGTH=485 492 e-139
AT5G13740.1 | chr5:4432689-4436483 FORWARD LENGTH=487 483 e-137
AT5G13940.1 | chr5:4490263-4495585 REVERSE LENGTH=810 74 1e-13
>AT5G13750.1 | chr5:4438318-4441289 FORWARD LENGTH=479
Length = 478
Score = 514 bits (1325), Expect = e-146, Method: Compositional matrix adjust.
Identities = 259/475 (54%), Positives = 323/475 (68%), Gaps = 8/475 (1%)
Query: 14 IKGDYHQGCPGCAYDRKKEVYRGLPYKEFLYLWMICLTAALPISSLFPFLYFMIRDLHVA 73
++ ++H+ C GC D+ K + RG P+ E +W+I L ALPISSLFPFLYFMI D ++A
Sbjct: 10 LEKNFHEDCSGCKVDQMKRLRRGFPFWELFTVWIIVLCTALPISSLFPFLYFMIDDFNIA 69
Query: 74 KRTEDIGFYAGFVGASFMFGRCLTSTIWGIAADRIGRKPXXXXXXXXXXXXNTLFGLSFT 133
K+ EDIGFYAGFVG SFM GR TS WG+ ADR GRKP NTLFGLS
Sbjct: 70 KKEEDIGFYAGFVGCSFMLGRAFTSVAWGLVADRYGRKPVILIGTASVVVFNTLFGLSLN 129
Query: 134 YWMAIATRFLLGALNGLLGPIKAYAIEVCRPEHEALALSLVSTAWXXXXXXXXXXXXYLS 193
+WMAI TRF LG+ NGLLGPIKAYA+E+ R E++ LALS VSTAW +L+
Sbjct: 130 FWMAIITRFCLGSFNGLLGPIKAYAMEIFRDEYQGLALSAVSTAWGIGLIIGPAIGGFLA 189
Query: 194 QPAEKFPNVFSPDSLFARFPYFLPCLCISVFAAVVLIGCIWMPETLHKHKADANRSQTVE 253
QPA+++P++FS DS+F +FP+FLPCL ISVFA +V I +PETLH HK N ++ +
Sbjct: 190 QPAKQYPSLFSQDSIFGKFPFFLPCLAISVFAFLVTIVSSRIPETLHNHK--FNDDESYD 247
Query: 254 ALESHLIDPEEK--ADQNGSLDCKKSLLSNWPLMSSIILYCVFSFHDMAYTEIFSLWAES 311
AL+ DPE A++NG K SLL+NWPL+SSII+YCVFS HDMAYTEIFSLWA S
Sbjct: 248 ALKDLSDDPESNKVAERNG----KSSLLNNWPLISSIIVYCVFSLHDMAYTEIFSLWANS 303
Query: 312 DRKYGGLSLSSEDVGQVLAITGASLLVYQLFIYPRINKVIGHIKASRIAAILCIPILFAY 371
RKYGGL S+ DVG VLA +G LL++QL +Y +++G I +RI+ L + +L Y
Sbjct: 304 PRKYGGLGYSTADVGSVLAFSGFGLLIFQLSLYSYAERLLGPIIVTRISGSLAMVVLSCY 363
Query: 372 PYMTYLSGPGLTIILNIASVIKNNLGVTIITGCFILQNNAVPQDQRGAANGLAMTGMSFF 431
P + LSG LT+ + ASV K+ LG + ITG FILQN AV QDQRGAANG+AMT MS F
Sbjct: 364 PLIAKLSGLALTVTVTSASVAKSVLGTSAITGLFILQNKAVRQDQRGAANGIAMTAMSLF 423
Query: 432 KAVAPAGAGIVFSWAQKRQQASFLPGDQMVXXXXXXXXXXXXXXXXKPFLAVPQQ 486
KA+ PA AGI+FSW++KRQ A+FLPG QMV KPFLA QQ
Sbjct: 424 KAIGPAAAGIIFSWSEKRQGAAFLPGTQMVFFILNVVLALGVVLTFKPFLAETQQ 478
>AT3G43790.3 | chr3:15655443-15658848 FORWARD LENGTH=485
Length = 484
Score = 492 bits (1266), Expect = e-139, Method: Compositional matrix adjust.
Identities = 247/459 (53%), Positives = 314/459 (68%), Gaps = 24/459 (5%)
Query: 17 DYHQGCPGCAYDRKKEVYRGLPYKEFLYLWMICLTAALPISSLFPFLYFMIRDLHVAKRT 76
+ ++ CPGC DR K+ RG+PY ++W++ L ALPISSLFP++YFMIRD H+AK+
Sbjct: 12 EKNEDCPGCIIDRTKQQQRGVPYLHLSFIWLVSLCTALPISSLFPYIYFMIRDFHIAKQE 71
Query: 77 EDIGFYAGFVGASFMFGRCLTSTIWGIAADRIGRKPXXXXXXXXXXXXNTLFGLSFTYWM 136
EDIGFYAGFVG+SFM GR LTS WG ADR GRKP NTLFGLS ++W+
Sbjct: 72 EDIGFYAGFVGSSFMIGRALTSIFWGKLADRYGRKPIILIGTFSVIIFNTLFGLSTSFWL 131
Query: 137 AIATRFLLGALNGLLGPIKAYAIEVCRPEHEALALSLVSTAWXXXXXXXXXXXXYLSQPA 196
AI+ RFLLG N LLG I+AYA EV E+ AL+LS+VST+ YL+QPA
Sbjct: 132 AISVRFLLGCFNCLLGVIRAYASEVVSEEYNALSLSVVSTSRGIGLILGPAIGGYLAQPA 191
Query: 197 EKFPNVFSPDSLFARFPYFLPCLCISVFAAVVLIGCIWMPETLHKHKADANRSQTVEALE 256
EK+PN+FS S+F RFPYFLP L ISV+A VLI C W+PETLH A
Sbjct: 192 EKYPNIFSQSSVFGRFPYFLPSLVISVYATAVLIACWWLPETLHTRCRIAQGR------- 244
Query: 257 SHLIDPEEKAD---QNGSLDCKK-----SLLSNWPLMSSIILYCVFSFHDMAYTEIFSLW 308
++P E D + G LD +K SLL N PLM+ II+YCVFS ++AY EIFSLW
Sbjct: 245 ---LNPTELNDDESRGGGLDEQKIINKPSLLRNRPLMAIIIVYCVFSLQEIAYNEIFSLW 301
Query: 309 AESDRKYGGLSLSSEDVGQVLAITGASLLVYQLFIYPRINKVIGHIKASRIAAILCIPIL 368
A SDR YGGLS SS+DVG+VLAI+G LLV+QL +YP + K +G + R++A+L IP+L
Sbjct: 302 AVSDRSYGGLSFSSQDVGEVLAISGLGLLVFQLLVYPPLEKSVGLLAVIRLSAVLLIPLL 361
Query: 369 FAYPYMTYLSGPGLTIILNIASVIKNNLGVTIITGCFILQNNAVPQDQRGAANGLAMTGM 428
YPY+ LSG L +++N AS+IKN L ++++TG FI+ N AVPQ+QRGAANG++MT M
Sbjct: 362 SCYPYIALLSGVTLHLVINCASIIKNALSISLVTGLFIMLNKAVPQNQRGAANGISMTAM 421
Query: 429 SFFKAVAPAGAGIVFSWAQKRQQASFLPG------DQMV 461
S FK+ PAG G++FSWAQKRQ A+FLPG D+MV
Sbjct: 422 SVFKSFGPAGGGVLFSWAQKRQDATFLPGQIFAPCDEMV 460
>AT5G13740.1 | chr5:4432689-4436483 FORWARD LENGTH=487
Length = 486
Score = 483 bits (1244), Expect = e-137, Method: Compositional matrix adjust.
Identities = 247/475 (52%), Positives = 311/475 (65%), Gaps = 3/475 (0%)
Query: 15 KGDYHQGCPGCAYDRKKEVYRGLPYKEFLYLWMICLTAALPISSLFPFLYFMIRDLHVAK 74
K +YH GCPGC ++ K++ RG PY E ++W+I L+ +LPISSL+PFLY+MI D VAK
Sbjct: 12 KQNYHDGCPGCKVEQMKQLRRGYPYLELSFVWIIVLSTSLPISSLYPFLYYMIEDFGVAK 71
Query: 75 RTEDIGFYAGFVGASFMFGRCLTSTIWGIAADRIGRKPXXXXXXXXXXXXNTLFGLSFTY 134
+DIGFYAGFVG SFM GR LTS WGI ADR GRKP N LFGLS +
Sbjct: 72 TEKDIGFYAGFVGCSFMLGRALTSVFWGIVADRYGRKPIILLGTISIAIFNALFGLSSNF 131
Query: 135 WMAIATRFLLGALNGLLGPIKAYAIEVCRPEHEALALSLVSTAWXXXXXXXXXXXXYLSQ 194
WMAI TRFLLG+ N LLG +KAYA E+ R E++A A+S VSTAW +L+Q
Sbjct: 132 WMAIGTRFLLGSFNCLLGTMKAYASEIFRDEYQATAMSAVSTAWGIGLIIGPALGGFLAQ 191
Query: 195 PAEKFPNVFSPDSLFARFPYFLPCLCISVFAAVVLIGCIWMPETLHKHKADA-NRSQTVE 253
PA+K+PNVFS +SLF RF Y LPC IS FA +V + C ++PETLH HK D+ + + +
Sbjct: 192 PADKYPNVFSQESLFGRFRYALPCFTISAFALLVTVLCCFIPETLHNHKLDSLSHDDSYD 251
Query: 254 ALE--SHLIDPEEKADQNGSLDCKKSLLSNWPLMSSIILYCVFSFHDMAYTEIFSLWAES 311
LE SH P +SLL NWPLMSSII+YCV HD AY+EIF+LWA S
Sbjct: 252 ILEAASHESSPSTGKAGKNERKASQSLLKNWPLMSSIIVYCVLCLHDTAYSEIFALWANS 311
Query: 312 DRKYGGLSLSSEDVGQVLAITGASLLVYQLFIYPRINKVIGHIKASRIAAILCIPILFAY 371
RKYGGLS S+ +VG VLAI+G L +Q+F+YP K++G + +R A L IPI +Y
Sbjct: 312 PRKYGGLSYSTNEVGTVLAISGLGLFSFQVFVYPLAEKLLGPVLVTRYAGALMIPIQMSY 371
Query: 372 PYMTYLSGPGLTIILNIASVIKNNLGVTIITGCFILQNNAVPQDQRGAANGLAMTGMSFF 431
P++ LSG L+++LN AS++ N L V+ ITG ILQN AV Q QRGAANG+AMT MS F
Sbjct: 372 PFIAGLSGLSLSLMLNCASILINVLSVSAITGLLILQNRAVDQSQRGAANGIAMTAMSLF 431
Query: 432 KAVAPAGAGIVFSWAQKRQQASFLPGDQMVXXXXXXXXXXXXXXXXKPFLAVPQQ 486
K V PAGAGI+FSW+++R A+FLPG MV KPFL ++
Sbjct: 432 KTVGPAGAGILFSWSERRLNAAFLPGSHMVFFVLNVIVVVGVALTFKPFLTTSRR 486
>AT5G13940.1 | chr5:4490263-4495585 REVERSE LENGTH=810
Length = 809
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 50/86 (58%), Gaps = 16/86 (18%)
Query: 278 LLSNWPLMSSIILYCVFSFHDMAYTEIFSLWAESDRKYGGLSLSSEDVGQVLAITGASLL 337
LL NWPLMSSII+YC+ H+ AY+EIF+LWA S R+YGGL +
Sbjct: 159 LLGNWPLMSSIIVYCILCLHETAYSEIFALWANSPRRYGGL----------------GIF 202
Query: 338 VYQLFIYPRINKVIGHIKASRIAAIL 363
+Q+F+YP +++G + + A L
Sbjct: 203 FFQVFVYPLAKRLLGPVLVTHFAEAL 228
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.140 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,649,130
Number of extensions: 370548
Number of successful extensions: 906
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 901
Number of HSP's successfully gapped: 4
Length of query: 490
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 387
Effective length of database: 8,282,721
Effective search space: 3205413027
Effective search space used: 3205413027
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 114 (48.5 bits)