FiT-DB / Search/ Help/ Sample detail

Os11g0131300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.18 (0.0317) R2 : 0.602
β1 : 0.995 (0.116) R2dD : 0.0668 R2D : 0.00284
β2 : 2.73 (0.109) R2dC : 1.09 R2C : 0.00396
β3 : -1.74 (0.101) R2dE : 0.516 R2E : -0.573
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.484 (0.0678) R2dN8 : 0.06 R2N8 : 0.00597
σ : 0.592
deviance : 161.52
__
_____
C
peak time of C : 14.4
E
wheather : temperature
threshold : 16.45
memory length : 275
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 1.15
open length of G : 17.3

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
159.21 0.593 6.19 0.953 2.76 -1.79 1.04 -0.359 0.473 14.3 16.5 282 1.07 17.2
159.49 0.588 6.18 0.978 2.74 -1.76 0.795 -- 0.477 14.3 16.49 283 1.08 17.2
161.08 0.591 6.18 1 2.72 -1.73 -- 0.314 0.481 14.4 16.41 275 1.17 17.2
161.52 0.592 6.18 0.995 2.73 -1.74 -- -- 0.484 14.4 16.45 275 1.15 17.3
330.32 0.846 6.13 0.954 -- 1.01 -- 0.976 0.494 -- 25.21 473 2.25 15.8
220.13 0.696 6.23 0.807 1.73 -- 1.01 -- 0.397 16.4 -- -- -- --
222.87 0.699 6.23 0.815 1.74 -- -- -- 0.402 16.4 -- -- -- --
179.2 0.623 6.19 0.834 -- 2 -- -- 0.468 -- 9.737 378 5.17 17.9
187.38 0.638 6.2 -- 2.71 -1.69 -- -- 0.371 14.4 16.31 271 1.27 17.2
384.83 0.917 6.22 0.747 -- -- -- -- 0.356 -- -- -- -- --
240.38 0.725 6.25 -- 1.72 -- -- -- 0.311 16.4 -- -- -- --
199.31 0.658 6.21 -- -- 1.97 -- -- 0.365 -- 8.849 370 5.35 17.7
399.54 0.933 6.23 -- -- -- -- -- 0.273 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 164.17 radiation 1.0 270 < th dose dependent rect. 5 21
2 164.28 temperature 15.0 270 > th dose independent rect. 1 17
5 165.50 wind 5.0 270 < th dose independent rect. 1 5
8 166.56 precipitation 0.1 270 < th dose independent rect. 1 5
9 166.56 precipitation 0.1 270 < th dose dependent rect. 1 5
10 166.72 humidity 50.0 270 > th dose independent rect. 6 19
12 167.07 humidity 50.0 270 > th dose dependent rect. 18 7
15 167.25 wind 9.0 270 < th dose independent rect. 6 19
16 167.27 radiation 10.0 270 < th dose independent rect. 1 5
19 167.70 radiation 1.0 270 < th dose dependent rect. 18 7
21 167.72 atmosphere 1010.0 270 < th dose independent rect. 1 5
22 167.75 temperature 10.0 270 > th dose independent rect. 1 5
24 167.75 temperature 30.0 270 < th dose independent rect. 1 5
25 167.75 humidity 50.0 270 > th dose independent rect. 1 5
28 167.75 atmosphere 995.0 270 > th dose independent rect. 1 5
33 167.75 temperature 10.0 270 > th dose independent rect. 6 19
36 167.94 precipitation 0.1 270 < th dose independent rect. 1 17
37 167.94 precipitation 0.1 270 < th dose dependent rect. 1 17
38 167.98 radiation 40.0 270 < th dose dependent rect. 1 5
42 168.18 temperature 30.0 270 < th dose independent rect. 18 7
43 168.20 precipitation 0.1 270 < th dose independent rect. 14 16
44 168.20 precipitation 0.1 270 < th dose dependent rect. 14 16
45 168.24 radiation 1.0 270 < th dose independent rect. 6 19
47 168.26 radiation 1.0 270 < th dose independent rect. 18 7
52 168.46 humidity 60.0 270 > th dose independent rect. 18 7
66 169.02 temperature 10.0 270 > th dose independent rect. 6 8
67 169.02 atmosphere 995.0 270 > th dose independent rect. 6 8
68 169.02 atmosphere 1015.0 270 < th dose independent rect. 6 8
69 169.02 temperature 10.0 270 > th dose independent rect. 14 16
79 169.08 humidity 50.0 270 > th dose dependent rect. 6 19
82 169.16 temperature 10.0 270 > th dose dependent rect. 1 6
83 169.20 atmosphere 1000.0 270 > th dose independent rect. 19 6
85 169.28 radiation 1.0 270 < th dose independent rect. 5 21
93 169.47 humidity 50.0 270 > th dose independent rect. 5 21
98 169.50 precipitation 0.1 270 < th dose independent rect. 6 8
99 169.50 precipitation 0.1 270 < th dose dependent rect. 6 8
101 169.52 temperature 10.0 270 > th dose dependent rect. 1 18
102 169.53 wind 9.0 270 < th dose independent rect. 6 8
104 169.61 temperature 10.0 270 > th dose independent rect. 18 7
110 169.61 atmosphere 1015.0 270 < th dose independent rect. 1 17
111 169.62 wind 9.0 270 < th dose independent rect. 18 7
118 169.78 wind 9.0 270 < th dose dependent rect. 1 5
119 169.81 wind 1.0 270 > th dose independent rect. 1 5
123 170.09 precipitation 0.1 270 < th dose independent rect. 6 19
125 170.09 precipitation 0.1 270 < th dose dependent rect. 6 19
127 170.16 wind 5.0 270 < th dose independent rect. 2 3
164 170.64 precipitation 0.1 270 < th dose independent rect. 2 3
165 170.64 wind 9.0 270 < th dose independent rect. 14 16
166 170.64 precipitation 0.1 270 < th dose dependent rect. 2 3
167 170.69 humidity 50.0 270 > th dose dependent rect. 1 5
185 170.86 precipitation 0.1 270 < th dose independent rect. 18 7
186 170.86 precipitation 0.1 270 < th dose dependent rect. 18 7
187 170.87 wind 9.0 270 < th dose independent rect. 1 17
190 170.94 wind 1.0 270 > th dose independent rect. 11 9
191 170.94 radiation 1.0 270 < th dose dependent rect. 12 13
220 171.43 wind 9.0 270 < th dose independent rect. 5 21
241 171.56 humidity 50.0 270 > th dose independent rect. 6 8
254 171.78 atmosphere 995.0 270 > th dose independent rect. 6 19
257 171.81 temperature 10.0 270 > th dose independent rect. 2 3
259 171.81 temperature 30.0 270 < th dose independent rect. 2 3
260 171.81 humidity 50.0 270 > th dose independent rect. 2 3
263 171.81 atmosphere 995.0 270 > th dose independent rect. 2 3
264 171.81 atmosphere 1010.0 270 < th dose independent rect. 2 3
269 171.81 temperature 10.0 270 > th dose independent rect. 5 21
272 171.83 radiation 40.0 270 < th dose dependent rect. 2 3
286 171.92 atmosphere 1010.0 270 < th dose independent rect. 11 9
289 171.97 atmosphere 995.0 270 > th dose dependent rect. 18 7
300 172.10 temperature 15.0 270 > th dose independent rect. 11 9
311 172.30 atmosphere 995.0 270 > th dose independent rect. 1 17
321 172.37 radiation 40.0 270 < th dose independent rect. 14 16
346 172.66 wind 9.0 10 < th dose dependent rect. 3 6
349 172.72 radiation 1.0 270 < th dose independent rect. 12 13
411 173.38 humidity 50.0 270 > th dose dependent rect. 2 3
416 173.40 wind 1.0 270 > th dose independent rect. 1 18
435 173.56 wind 9.0 270 < th dose dependent rect. 2 3
487 173.69 radiation 30.0 90 < th dose independent rect. 3 6
489 173.70 radiation 40.0 90 < th dose dependent rect. 3 6
492 173.73 precipitation 0.1 270 < th dose independent rect. 11 9
494 173.73 precipitation 0.1 270 < th dose dependent rect. 11 9
503 173.84 atmosphere 995.0 270 > th dose independent rect. 14 16
535 173.99 wind 5.0 10 < th dose independent rect. 3 6
536 173.99 humidity 50.0 270 > th dose independent rect. 20 15
541 174.00 temperature 10.0 270 > th dose independent rect. 20 15
542 174.00 atmosphere 995.0 270 > th dose independent rect. 20 15
545 174.12 wind 1.0 270 > th dose independent rect. 3 1
557 174.32 precipitation 0.1 10 < th dose independent rect. 3 6
558 174.32 precipitation 0.1 10 < th dose dependent rect. 3 6
609 174.80 wind 1.0 270 > th dose independent rect. 13 16
611 174.81 wind 9.0 270 < th dose independent rect. 20 15
612 174.82 precipitation 0.1 270 < th dose independent rect. 5 21
613 174.82 precipitation 0.1 270 < th dose dependent rect. 5 21
624 174.90 atmosphere 1015.0 270 < th dose independent rect. 14 16
740 175.56 wind 9.0 270 < th dose dependent rect. 18 7
779 175.75 atmosphere 1015.0 270 < th dose dependent rect. 1 5
798 175.90 precipitation 0.1 10 < th dose independent rect. 9 18
800 175.90 precipitation 0.1 10 < th dose dependent rect. 9 18
804 175.93 wind 1.0 270 > th dose independent rect. 19 6
819 176.02 precipitation 0.1 270 < th dose independent rect. 20 16
821 176.02 precipitation 0.1 270 < th dose dependent rect. 20 16
831 176.11 temperature 10.0 10 > th dose independent rect. 3 6
833 176.11 temperature 30.0 10 < th dose independent rect. 3 6
834 176.11 humidity 50.0 10 > th dose independent rect. 3 6
836 176.11 atmosphere 995.0 10 > th dose independent rect. 3 6
837 176.11 atmosphere 1015.0 10 < th dose independent rect. 3 6
838 176.11 temperature 10.0 10 > th dose independent rect. 9 18
856 176.16 wind 9.0 270 < th dose independent rect. 11 9
917 176.40 radiation 40.0 10 < th dose independent rect. 3 6
995 176.73 atmosphere 1000.0 10 > th dose independent rect. 20 8