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Os11g0125900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Nucleoside phosphatase GDA1/CD39 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.4 (0.0655) R2 : 0.712
β1 : 3.27 (0.337) R2dD : 0.235 R2D : -0.798
β2 : -- (--) R2dC : -- R2C : --
β3 : -9.5 (0.464) R2dE : 1.68 R2E : -1.67
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -29.6 (1.07) R2dD*E : 1.78 R2D*E : -0.122
γ1 : 1.25 (0.127) R2dN8 : 0.131 R2N8 : -0.39
σ : 0.872
deviance : 350.48
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C
peak time of C : --
E
wheather : radiation
threshold : 14.72
memory length : 4320
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18
open length of G : 11.1

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
347.66 0.876 11.4 3.24 0.151 -9.4 -1.05 -29.8 1.18 9.54 18.03 4320 18 11.1
469.78 1.01 10.2 3.69 0.369 -8.07 0.103 -- 1.49 10.2 33.09 47520 17.9 10.6
347.75 0.869 11.4 3.31 0.32 -9.41 -- -29.6 1.21 9.19 9.886 4320 18 11.1
458.06 0.997 10.3 3.27 0.342 -7.63 -- -- 1.33 6.6 124 47520 17.9 10.4
350.48 0.872 11.4 3.27 -- -9.5 -- -29.6 1.25 -- 14.72 4320 18 11.1
1005.12 1.49 10.3 -1.45 0.545 -- 0.127 -- 1.15 8.66 -- -- -- --
1005.18 1.48 10.3 -1.45 0.544 -- -- -- 1.15 8.67 -- -- -- --
452.22 0.99 10.2 3.18 -- -7.33 -- -- 1.44 -- 138.3 47520 18 10.2
357.15 0.88 10.4 -- 0.233 -5.01 -- -- 0.728 2.12 51.04 47520 18.5 8.76
1021.92 1.49 10.3 -1.45 -- -- -- -- 1.16 -- -- -- -- --
1060.47 1.52 10.3 -- 0.541 -- -- -- 1.31 8.87 -- -- -- --
359.52 0.883 10.4 -- -- -4.95 -- -- 0.767 -- 44.36 47520 18.5 8.79
1077.16 1.53 10.3 -- -- -- -- -- 1.32 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 308.70 humidity 90 43200 < th dose independent rect. 9 1
2 308.96 radiation 1 43200 > th dose independent rect. 18 11
3 310.86 humidity 90 43200 > th dose independent rect. 9 1
4 312.73 humidity 80 43200 > th dose dependent rect. 9 2
5 313.64 humidity 90 43200 < th dose independent rect. 9 3
7 314.13 radiation 1 43200 < th dose independent rect. 18 11
14 318.30 radiation 1 14400 < th dose dependent rect. 18 22
20 319.94 humidity 90 43200 > th dose independent rect. 8 4
29 320.98 atmosphere 1005 43200 > th dose dependent rect. 19 1
33 321.59 radiation 1 14400 < th dose dependent rect. 18 19
34 321.65 atmosphere 1005 43200 > th dose dependent rect. 13 1
36 321.78 radiation 1 14400 < th dose independent rect. 18 21
38 321.85 radiation 1 14400 > th dose independent rect. 18 21
39 321.92 atmosphere 1005 43200 > th dose dependent rect. 9 1
40 321.92 atmosphere 1005 43200 > th dose dependent rect. 9 5
45 322.24 atmosphere 1005 43200 > th dose dependent rect. 17 3
48 322.26 atmosphere 1005 43200 > th dose dependent rect. 9 11
59 322.49 atmosphere 1005 43200 > th dose dependent rect. 5 15
78 322.64 humidity 90 43200 < th dose independent rect. 5 15
92 322.73 atmosphere 1005 43200 > th dose dependent sin 23 NA
103 322.79 radiation 1 43200 > th dose independent rect. 18 1
174 323.21 radiation 1 14400 < th dose dependent rect. 18 14
303 324.14 atmosphere 1005 43200 > th dose dependent rect. 16 22
305 324.15 atmosphere 1005 43200 > th dose dependent rect. 8 22
315 324.19 atmosphere 1005 43200 > th dose dependent no NA NA
331 324.26 atmosphere 1005 43200 > th dose dependent rect. 12 23
336 324.28 atmosphere 1005 43200 > th dose dependent rect. 19 23
425 324.78 humidity 90 43200 > th dose dependent rect. 5 8
450 324.96 radiation 1 14400 < th dose dependent rect. 14 21
524 325.54 radiation 1 14400 < th dose dependent sin 11 NA
551 325.75 radiation 1 14400 < th dose dependent rect. 15 17
553 325.76 humidity 90 43200 > th dose dependent rect. 6 6
559 325.79 radiation 1 43200 < th dose independent rect. 18 7
574 325.95 radiation 1 14400 < th dose dependent rect. 6 22
580 325.97 radiation 1 14400 < th dose dependent rect. 6 20
583 325.98 radiation 1 43200 < th dose independent rect. 18 2
592 326.03 radiation 1 14400 < th dose dependent rect. 9 23
602 326.09 radiation 1 14400 < th dose dependent rect. 22 23
606 326.10 radiation 1 14400 < th dose dependent rect. 3 23
607 326.11 radiation 1 14400 < th dose dependent no NA NA
659 326.39 radiation 1 14400 < th dose dependent rect. 5 16
683 326.51 radiation 1 14400 < th dose dependent rect. 3 18
781 327.99 atmosphere 1005 43200 < th dose independent rect. 13 5
796 328.23 atmosphere 1005 43200 > th dose independent rect. 16 2
798 328.23 radiation 1 14400 < th dose dependent rect. 22 10
820 328.52 atmosphere 1005 43200 < th dose independent rect. 16 1
821 328.52 atmosphere 1005 43200 > th dose dependent rect. 24 1
836 328.76 radiation 1 14400 < th dose independent rect. 18 14
846 328.98 atmosphere 1005 43200 > th dose independent rect. 13 5
851 329.18 radiation 1 14400 < th dose dependent rect. 5 3
852 329.20 radiation 1 14400 < th dose dependent rect. 3 5
857 329.31 humidity 90 43200 > th dose independent rect. 5 16
865 329.42 radiation 1 14400 < th dose dependent sin 2 NA
892 329.84 humidity 90 43200 < th dose independent sin 22 NA
938 330.54 radiation 1 14400 < th dose dependent rect. 22 17
944 330.60 humidity 80 43200 > th dose dependent rect. 7 12
957 330.84 humidity 80 43200 > th dose independent rect. 16 1
967 331.00 radiation 1 14400 > th dose independent rect. 18 15
986 331.31 radiation 1 14400 < th dose dependent rect. 3 12