BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0125900 Os11g0125900|Os11g0125900
(296 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G04080.1 | chr3:1068068-1070917 REVERSE LENGTH=472 119 2e-27
AT5G18280.2 | chr5:6050799-6054875 REVERSE LENGTH=631 107 8e-24
AT1G14240.1 | chr1:4865159-4867777 FORWARD LENGTH=484 80 1e-15
AT1G14250.1 | chr1:4868675-4871203 FORWARD LENGTH=489 75 6e-14
AT1G14230.1 | chr1:4861497-4863991 FORWARD LENGTH=504 68 5e-12
AT2G02970.1 | chr2:865395-868007 REVERSE LENGTH=556 65 6e-11
>AT3G04080.1 | chr3:1068068-1070917 REVERSE LENGTH=472
Length = 471
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 79/110 (71%)
Query: 41 GPGRYAVILDAGSTGTRVHVFRFDNKLDLLKVGDDIELFAKVDPGLSSYAGRPQDAANSI 100
GP YAVI DAGS+G+RVHV+ FD LDL+ + +++ELF ++ PGLS+Y P+ +ANS+
Sbjct: 66 GPKNYAVIFDAGSSGSRVHVYCFDQNLDLVPLENELELFLQLKPGLSAYPNDPRQSANSL 125
Query: 101 LPLLDKANTVVPTRLMNKTPLKLGATAGLRLIGDEKANQILEAILERKDG 150
+ LLDKA VP L KTP+++GATAGLR +G + + IL+A+ E G
Sbjct: 126 VTLLDKAEASVPRELRPKTPVRVGATAGLRALGHQASENILQAVRELLKG 175
Score = 110 bits (276), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 89/154 (57%), Gaps = 3/154 (1%)
Query: 144 ILERKDGPFSNCMLRGFSGNYTYNDKQYDATTAPQGADYHKCREEVVKLLKVN-APCETK 202
IL+ + + C+ G++G Y Y K + A +P GA +CR + LKVN + C
Sbjct: 281 ILKVSEDSNNPCIATGYAGTYKYGGKAFKAAASPSGASLDECRRVAINALKVNNSLCTHM 340
Query: 203 NCSFNGVWNXXXXXXQDDLYVASAFYYIASHVGFIDSDAPSAKSTPATFKAVAEKACKLS 262
C+F GVWN Q ++VAS F+ A+ GF+D + P A+ P F+ A KAC +
Sbjct: 341 KCTFGGVWNGGGGGGQKKMFVASFFFDRAAEAGFVDPNQPVAEVRPLDFEKAANKACNMR 400
Query: 263 VKEAKVEYPNVRDH--AYLCMDLIYEYSLLVDGF 294
++E K ++P V + YLC+DL+Y+Y+LLVDGF
Sbjct: 401 MEEGKSKFPRVEEDNLPYLCLDLVYQYTLLVDGF 434
>AT5G18280.2 | chr5:6050799-6054875 REVERSE LENGTH=631
Length = 630
Score = 107 bits (267), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 87/154 (56%), Gaps = 3/154 (1%)
Query: 144 ILERKDGPFSNCMLRGFSGNYTYNDKQYDATTAPQGADYHKCREEVVKLLKVN-APCETK 202
IL+ + + C++ G+ G Y Y K++ A + GA +CR + LKVN C
Sbjct: 440 ILKVSEDSENPCIVAGYDGMYKYGGKEFKAPASQSGASLDECRRITINALKVNDTLCTHM 499
Query: 203 NCSFNGVWNXXXXXXQDDLYVASAFYYIASHVGFIDSDAPSAKSTPATFKAVAEKACKLS 262
C+F GVWN Q +++VAS F+ A+ GF+D P A P F+ A+KAC +
Sbjct: 500 KCTFGGVWNGGRGGGQKNMFVASFFFDRAAEAGFVDPKQPVATVRPMDFEKAAKKACSMK 559
Query: 263 VKEAKVEYPNVRDH--AYLCMDLIYEYSLLVDGF 294
++E K +P V + YLCMDL+Y+Y+LL+DGF
Sbjct: 560 LEEGKSTFPLVEEENLPYLCMDLVYQYTLLIDGF 593
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 85/173 (49%), Gaps = 55/173 (31%)
Query: 26 AVLGQKGGVVEGQAAGPGRYAVILDAGSTGTRVHVFRFDNKLDLLKVGDDIELFAK---- 81
+V +KGG + GP YAVI DAGS+G+RVHV+ FD LDL+ +G+++ELF +
Sbjct: 161 SVHNRKGGP---NSRGPKNYAVIFDAGSSGSRVHVYCFDQNLDLIPLGNELELFLQSLVK 217
Query: 82 ------------------------------------------------VDPGLSSYAGRP 93
+ PGLS+Y P
Sbjct: 218 KLASPNGSNRANMTLFDHGNISCPEVKLNRINGKLRTLLSMYIIDLCSLKPGLSAYPTDP 277
Query: 94 QDAANSILPLLDKANTVVPTRLMNKTPLKLGATAGLRLIGDEKANQILEAILE 146
+ AANS++ LLDKA VP L KT +++GATAGLR +G + + IL+A+ E
Sbjct: 278 RQAANSLVSLLDKAEASVPRELRPKTHVRVGATAGLRTLGHDASENILQAVRE 330
>AT1G14240.1 | chr1:4865159-4867777 FORWARD LENGTH=484
Length = 483
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 64/101 (63%), Gaps = 2/101 (1%)
Query: 44 RYAVILDAGSTGTRVHVF--RFDNKLDLLKVGDDIELFAKVDPGLSSYAGRPQDAANSIL 101
RY+V++DAGS+GTRVHVF F++ + G+ K+ PGLSSYA P+ A+ S+
Sbjct: 69 RYSVLIDAGSSGTRVHVFGYWFESGKPVFDFGEKHYANLKLTPGLSSYADNPEGASVSVT 128
Query: 102 PLLDKANTVVPTRLMNKTPLKLGATAGLRLIGDEKANQILE 142
L++ A +P R+ ++ ++L ATAG+RL+ QILE
Sbjct: 129 KLVEFAKQRIPKRMFRRSDIRLMATAGMRLLEVPVQEQILE 169
>AT1G14250.1 | chr1:4868675-4871203 FORWARD LENGTH=489
Length = 488
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 63/101 (62%), Gaps = 2/101 (1%)
Query: 44 RYAVILDAGSTGTRVHVF--RFDNKLDLLKVGDDIELFAKVDPGLSSYAGRPQDAANSIL 101
Y+VI+DAGS+GTR+HVF F++ + G++ K+ PGLSSYA P+ A+ S+
Sbjct: 70 HYSVIIDAGSSGTRIHVFGYWFESGKPVFDFGEEHYASLKLSPGLSSYADNPEGASVSVT 129
Query: 102 PLLDKANTVVPTRLMNKTPLKLGATAGLRLIGDEKANQILE 142
L++ A +P + K+ ++L ATAG+RL+ QIL+
Sbjct: 130 KLVEFAKGRIPKGKLKKSDIRLMATAGMRLLDVPVQEQILD 170
>AT1G14230.1 | chr1:4861497-4863991 FORWARD LENGTH=504
Length = 503
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 60/100 (60%), Gaps = 2/100 (2%)
Query: 45 YAVILDAGSTGTRVHVF--RFDNKLDLLKVGDDIELFAKVDPGLSSYAGRPQDAANSILP 102
Y+VI+D GS+GTRVHVF R ++ + G++ K+ PGLS+YA P+ + S+
Sbjct: 81 YSVIIDGGSSGTRVHVFGYRIESGKPVFDFGEENYASLKLSPGLSAYADNPEGVSESVTE 140
Query: 103 LLDKANTVVPTRLMNKTPLKLGATAGLRLIGDEKANQILE 142
L++ A V + K+ ++L ATAG+RL+ QIL+
Sbjct: 141 LVEFAKKRVHKGKLKKSDIRLMATAGMRLLELPVQEQILD 180
>AT2G02970.1 | chr2:865395-868007 REVERSE LENGTH=556
Length = 555
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 58/98 (59%), Gaps = 2/98 (2%)
Query: 37 GQAAGPGRYAVILDAGSTGTRVHVF--RFDNKLDLLKVGDDIELFAKVDPGLSSYAGRPQ 94
G G RY+V++D GSTGTR+HVF R ++ + + K+ PGLS++A P
Sbjct: 79 GNLRGSLRYSVVIDGGSTGTRIHVFGYRIESGKPVFEFRGANYASLKLHPGLSAFADDPD 138
Query: 95 DAANSILPLLDKANTVVPTRLMNKTPLKLGATAGLRLI 132
A+ S+ L++ A VP + +T ++L ATAG+RL+
Sbjct: 139 GASVSLTELVEFAKGRVPKGMWIETEVRLMATAGMRLL 176
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.135 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,781,103
Number of extensions: 238549
Number of successful extensions: 510
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 502
Number of HSP's successfully gapped: 9
Length of query: 296
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 198
Effective length of database: 8,419,801
Effective search space: 1667120598
Effective search space used: 1667120598
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)