Os11g0116400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Elongation factor P (EF-P).
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Os11g0116400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Elongation factor P (EF-P).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 180.85 | 0.632 | 11 | -1.33 | 2.65 | 1.41 | 0.707 | 4.37 | -1.32 | 20 | 28.53 | 168 | -- | -- |
| 204.37 | 0.666 | 11 | -1.26 | 2.52 | 1.34 | 0.499 | -- | -1.28 | 20 | 29.9 | 276 | -- | -- |
| 182.24 | 0.629 | 11 | -1.33 | 2.65 | 1.39 | -- | 4.23 | -1.32 | 19.9 | 29.29 | 169 | -- | -- |
| 198.75 | 0.657 | 11 | -1.41 | 2.47 | 1.23 | -- | -- | -1.31 | 20.5 | 2.984 | 303 | -- | -- |
| 299.13 | 0.806 | 11 | -1.34 | -- | 2.83 | -- | 4.54 | -1.54 | -- | -0.0002079 | 856 | -- | -- |
| 220.14 | 0.696 | 11 | -1.32 | 2.64 | -- | 0.271 | -- | -1.25 | 19.4 | -- | -- | -- | -- |
| 220.33 | 0.695 | 11 | -1.33 | 2.64 | -- | -- | -- | -1.25 | 19.4 | -- | -- | -- | -- |
| 284.15 | 0.785 | 11 | -1.57 | -- | 2.9 | -- | -- | -1.61 | -- | -0.1635 | 850 | -- | -- |
| 247.26 | 0.732 | 11 | -- | 2.67 | 1.14 | -- | -- | -1.17 | 20.3 | 5.149 | 186 | -- | -- |
| 590.85 | 1.14 | 10.9 | -1.37 | -- | -- | -- | -- | -1.3 | -- | -- | -- | -- | -- |
| 266.89 | 0.764 | 11 | -- | 2.65 | -- | -- | -- | -1.1 | 19.3 | -- | -- | -- | -- |
| 348.82 | 0.87 | 11 | -- | -- | 2.83 | -- | -- | -1.43 | -- | -0.2995 | 844 | -- | -- |
| 640.58 | 1.18 | 10.9 | -- | -- | -- | -- | -- | -1.14 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 169.87 | temperature | 10 | 90 | > th | dose dependent | rect. | 8 | 21 |
| 2 | 171.98 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 8 |
| 4 | 172.22 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 5 | 18 |
| 8 | 172.83 | temperature | 10 | 10 | > th | dose dependent | rect. | 8 | 22 |
| 14 | 174.72 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 6 | 17 |
| 16 | 174.93 | temperature | 25 | 270 | > th | dose dependent | sin | 6 | NA |
| 22 | 175.59 | temperature | 25 | 270 | > th | dose dependent | rect. | 21 | 17 |
| 39 | 176.69 | radiation | 30 | 270 | > th | dose dependent | sin | 8 | NA |
| 48 | 176.98 | radiation | 30 | 270 | > th | dose dependent | rect. | 14 | 21 |
| 59 | 177.28 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 75 | 177.98 | radiation | 40 | 270 | < th | dose independent | rect. | 9 | 23 |
| 97 | 178.46 | temperature | 25 | 90 | > th | dose dependent | sin | 2 | NA |
| 103 | 178.59 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 7 |
| 110 | 178.73 | radiation | 40 | 270 | < th | dose independent | rect. | 1 | 23 |
| 112 | 178.80 | radiation | 30 | 270 | > th | dose dependent | rect. | 9 | 2 |
| 115 | 178.89 | radiation | 40 | 270 | < th | dose dependent | rect. | 2 | 21 |
| 127 | 179.31 | radiation | 30 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 128 | 179.32 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 2 |
| 131 | 179.37 | radiation | 30 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 151 | 179.54 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 11 |
| 180 | 179.97 | radiation | 40 | 270 | > th | dose independent | rect. | 14 | 21 |
| 182 | 179.97 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 14 |
| 183 | 179.99 | wind | 5 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 194 | 180.13 | radiation | 40 | 270 | > th | dose independent | sin | 8 | NA |
| 217 | 180.27 | wind | 5 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 218 | 180.27 | radiation | 40 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 222 | 180.36 | radiation | 40 | 90 | < th | dose independent | rect. | 5 | 18 |
| 226 | 180.47 | radiation | 40 | 270 | > th | dose independent | sin | 11 | NA |
| 229 | 180.50 | radiation | 30 | 90 | < th | dose independent | rect. | 5 | 6 |
| 280 | 180.74 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 5 | 18 |
| 290 | 180.85 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 9 | 20 |
| 299 | 180.93 | temperature | 15 | 90 | > th | dose dependent | rect. | 5 | 3 |
| 301 | 180.94 | wind | 5 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 315 | 181.05 | radiation | 40 | 270 | < th | dose independent | rect. | 2 | 21 |
| 346 | 181.50 | radiation | 20 | 90 | < th | dose independent | rect. | 5 | 18 |
| 347 | 181.51 | radiation | 40 | 90 | < th | dose dependent | rect. | 5 | 6 |
| 363 | 181.76 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 6 | 17 |
| 367 | 181.79 | radiation | 40 | 270 | > th | dose independent | rect. | 9 | 2 |
| 425 | 182.04 | temperature | 20 | 14400 | > th | dose independent | rect. | 19 | 5 |
| 427 | 182.05 | temperature | 20 | 90 | > th | dose independent | rect. | 5 | 3 |
| 471 | 182.34 | temperature | 15 | 4320 | > th | dose independent | rect. | 7 | 2 |
| 478 | 182.44 | temperature | 20 | 90 | > th | dose independent | rect. | 5 | 18 |
| 482 | 182.47 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 3 |
| 494 | 182.60 | radiation | 20 | 270 | < th | dose dependent | rect. | 4 | 5 |
| 516 | 182.65 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 18 |
| 520 | 182.67 | temperature | 20 | 14400 | < th | dose independent | rect. | 19 | 5 |
| 524 | 182.73 | radiation | 1 | 90 | < th | dose dependent | sin | 9 | NA |
| 578 | 182.99 | radiation | 40 | 270 | < th | dose independent | sin | 6 | NA |
| 598 | 183.00 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 2 |
| 600 | 183.01 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 607 | 183.06 | temperature | 20 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 617 | 183.10 | radiation | 40 | 10 | < th | dose dependent | rect. | 6 | 18 |
| 667 | 183.36 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 10 |
| 698 | 183.55 | radiation | 1 | 270 | > th | dose dependent | rect. | 7 | 8 |
| 727 | 183.71 | humidity | 70 | 90 | > th | dose independent | rect. | 5 | 6 |
| 769 | 183.77 | temperature | 15 | 90 | > th | dose independent | rect. | 7 | 23 |
| 796 | 183.89 | radiation | 40 | 90 | < th | dose dependent | rect. | 5 | 8 |
| 839 | 184.03 | wind | 9 | 90 | < th | dose independent | rect. | 7 | 23 |
| 862 | 184.13 | radiation | 30 | 270 | > th | dose dependent | no | NA | NA |
| 999 | 184.18 | wind | 7 | 270 | < th | dose independent | rect. | 7 | 21 |