BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0116400 Os11g0116400|AK059833
         (229 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G08740.1  | chr3:2654788-2656154 REVERSE LENGTH=237            305   2e-83
AT4G26310.2  | chr4:13314147-13316066 REVERSE LENGTH=262           65   3e-11

>AT3G08740.1 | chr3:2654788-2656154 REVERSE LENGTH=237
          Length = 236

 Score =  305 bits (780), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 138/213 (64%), Positives = 180/213 (84%), Gaps = 2/213 (0%)

Query: 19  SSFAQLRRPSSCLAGPRPLRSRLTRVY-ALSSNDIRVGSNLEVDGAPWKVIEFLHVKPGK 77
           +SF+ + R +       P  +R  R++ ++S+NDI+ G+N+EVDGAPW+V+EFLHVKPGK
Sbjct: 24  ASFSSMNRLALPAVRISPRTNRFPRIHCSMSANDIKAGTNIEVDGAPWRVLEFLHVKPGK 83

Query: 78  GAAFVRTKMRNYITGNTVDKTFRAGSTIPEASISKETKQFTYKDGAQFVFMDLTTFEESR 137
           GAAFVRTK+RNY+ G+TV++TFRAG ++ EA+I KETKQFTYKDG+QFVFMDLTT+EE+R
Sbjct: 84  GAAFVRTKIRNYVNGSTVERTFRAGISVEEANIYKETKQFTYKDGSQFVFMDLTTYEETR 143

Query: 138 LNESDVGDRQKWLKEGMDCNLLYWNGRIIDFDLPITVRLTVTDTDPG-QGDSAQGGTKPA 196
           LNESD+G++ KWLKEGMDC LLYW  ++IDFDLPITV+L V D DPG +GD+ QGG+KPA
Sbjct: 144 LNESDMGEKTKWLKEGMDCILLYWKDKVIDFDLPITVKLKVVDVDPGLRGDTVQGGSKPA 203

Query: 197 TVETGAVVTVPSFVNVGDDILIDSRTGQYMNRA 229
           T+ETGA+V VP F+NVG++I +D+RTG YMNRA
Sbjct: 204 TMETGAIVAVPLFINVGEEIFVDTRTGAYMNRA 236



>AT4G26310.2 | chr4:13314147-13316066 REVERSE LENGTH=262
          Length = 261

 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 86/169 (50%), Gaps = 4/169 (2%)

Query: 37  LRSRLTRVYALSSNDIRVGSNLEVDGAPWKVIEFLHVKPGKGAAFVRTKMRNYITGNTVD 96
           L+ R  +V A+    +R G+ +E  G  ++V+E  H + G+G A ++ ++R+  TGN ++
Sbjct: 66  LQRRGVKVNAI---QLRAGNVIERTGRTFRVVEAEHKQQGRGGASIQVELRDVDTGNKLN 122

Query: 97  KTFRAGSTIPEASISKETKQFTYKDGAQFVFMDLTTFEESRLNESDVGDRQKWLKEGMDC 156
             F +  ++ +  + +++    Y +G     ++  TFE+  +     G    +LKE M  
Sbjct: 123 LRFGSEESVEKVFVEEKSFTCLYAEGDTAYLIEPNTFEQVEVPLDIFGKAAVYLKEEMKV 182

Query: 157 NLLYWNGRIIDFDLPITVRLTVTDTD-PGQGDSAQGGTKPATVETGAVV 204
            L  ++GR +   +P  +  TV +T  P +G ++    K A ++ G+ +
Sbjct: 183 QLQLYDGRALSASIPKHITCTVVETQLPMKGLTSAPRYKRALLDNGSTI 231



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.134    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,157,164
Number of extensions: 222896
Number of successful extensions: 465
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 464
Number of HSP's successfully gapped: 2
Length of query: 229
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 134
Effective length of database: 8,502,049
Effective search space: 1139274566
Effective search space used: 1139274566
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)