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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0111900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : BTB domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.06 (0.0444) R2 : 0.241
β1 : -1.67 (0.163) R2dD : 0.183 R2D : 0.123
β2 : 0.575 (0.114) R2dC : 0.0429 R2C : 0.0181
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.567 (0.0948) R2dN8 : 0.0799 R2N8 : 0.0185
σ : 0.834
deviance : 317.51
__
_____
C
peak time of C : 4.24
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
292.07 0.803 4.07 -1.89 0.654 -0.667 -1.33 3.93 -0.693 5.26 93.38 504 -- --
308.52 0.818 4.08 -1.59 0.652 -0.824 -0.608 -- -0.713 5.66 89.92 722 -- --
295.39 0.8 4.07 -1.84 0.638 -0.639 -- 3.96 -0.661 4.65 93.97 463 -- --
308.23 0.818 4.08 -1.6 0.713 -0.792 -- -- -0.694 5.59 89.48 730 -- --
315.21 0.827 4.06 -1.85 -- -0.205 -- 4.34 -0.608 -- 94 451 -- --
316.31 0.834 4.06 -1.68 0.579 -- -0.655 -- -0.57 4.17 -- -- -- --
317.51 0.834 4.06 -1.67 0.575 -- -- -- -0.567 4.24 -- -- -- --
316.24 0.828 4.06 -1.7 -- -0.849 -- -- -0.534 -- 48.23 1279 -- --
373.77 0.9 4.04 -- 0.752 -0.987 -- -- -0.532 6.28 85.6 780 -- --
335.4 0.856 4.07 -1.65 -- -- -- -- -0.551 -- -- -- -- --
391.3 0.925 4.02 -- 0.544 -- -- -- -0.38 4.3 -- -- -- --
384.57 0.913 4.06 -- -- -1.2 -- -- -0.538 -- 81.2 1322 -- --
407.23 0.942 4.02 -- -- -- -- -- -0.368 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 289.07 wind 3 4320 > th dose independent rect. 5 4
2 289.80 wind 3 4320 < th dose independent rect. 5 4
13 292.14 atmosphere 1005 90 > th dose independent rect. 2 7
14 292.22 wind 3 4320 > th dose independent rect. 8 1
18 292.66 wind 3 4320 < th dose independent rect. 8 1
20 292.81 wind 3 4320 > th dose independent rect. 1 9
22 292.96 wind 3 4320 < th dose independent rect. 1 9
40 293.82 atmosphere 1000 90 > th dose dependent rect. 2 7
41 293.88 wind 3 4320 < th dose independent rect. 23 11
43 293.93 wind 3 4320 > th dose independent rect. 23 11
72 295.07 atmosphere 1005 270 > th dose independent rect. 24 7
82 295.30 radiation 10 1440 > th dose independent rect. 11 2
87 295.50 humidity 90 720 > th dose dependent rect. 20 17
88 295.50 humidity 90 720 > th dose dependent rect. 20 19
93 295.59 wind 5 4320 < th dose dependent rect. 6 3
111 295.96 humidity 90 720 > th dose dependent rect. 4 20
143 296.51 wind 1 4320 > th dose dependent rect. 6 3
169 296.76 humidity 60 4320 < th dose dependent rect. 17 16
183 296.92 humidity 90 720 > th dose independent rect. 20 17
187 296.93 humidity 60 4320 < th dose dependent rect. 16 18
198 297.02 humidity 60 4320 < th dose independent rect. 17 16
229 297.31 humidity 90 720 > th dose dependent rect. 22 1
231 297.35 humidity 90 720 > th dose dependent sin 9 NA
237 297.40 wind 9 4320 < th dose dependent rect. 6 1
245 297.45 radiation 10 1440 > th dose independent rect. 11 7
284 297.60 humidity 90 720 > th dose dependent rect. 8 23
295 297.70 humidity 90 720 > th dose dependent no NA NA
298 297.71 radiation 10 1440 < th dose dependent rect. 10 17
310 297.79 radiation 10 1440 < th dose dependent rect. 10 9
317 297.82 humidity 90 720 > th dose independent rect. 22 1
318 297.82 radiation 10 1440 < th dose dependent rect. 10 12
323 297.84 temperature 15 90 > th dose independent rect. 2 17
325 297.85 humidity 60 4320 < th dose dependent rect. 16 4
332 297.85 wind 5 4320 < th dose dependent rect. 23 11
343 297.87 wind 5 4320 < th dose dependent rect. 1 9
344 297.87 humidity 90 720 > th dose dependent rect. 11 23
345 297.88 wind 3 4320 < th dose independent sin 7 NA
352 297.91 wind 1 14400 < th dose dependent rect. 9 1
400 298.09 wind 3 4320 > th dose independent sin 7 NA
403 298.09 humidity 70 720 < th dose independent rect. 18 16
430 298.22 temperature 15 90 > th dose dependent rect. 2 7
444 298.28 humidity 90 720 > th dose dependent rect. 5 1
453 298.31 radiation 10 1440 < th dose dependent sin 19 NA
470 298.35 humidity 60 4320 < th dose independent rect. 17 3
507 298.44 radiation 20 1440 < th dose dependent rect. 11 4
537 298.54 humidity 60 4320 > th dose independent rect. 17 16
566 298.69 humidity 80 1440 > th dose independent rect. 18 1
569 298.69 radiation 1 270 < th dose dependent rect. 5 21
589 298.84 humidity 60 4320 > th dose independent rect. 17 14
593 298.85 humidity 60 4320 > th dose independent rect. 17 12
595 298.86 humidity 60 4320 > th dose independent rect. 17 7
596 298.86 humidity 60 4320 > th dose independent rect. 17 10
605 298.88 humidity 50 4320 > th dose independent sin 11 NA
626 298.89 humidity 90 4320 > th dose dependent rect. 2 3
636 298.91 humidity 60 4320 > th dose independent rect. 17 3
669 299.02 humidity 50 4320 < th dose independent sin 11 NA
677 299.03 temperature 30 720 < th dose independent rect. 18 8
680 299.04 atmosphere 1005 4320 > th dose independent rect. 10 1
707 299.15 atmosphere 1005 4320 > th dose independent rect. 8 4
710 299.15 humidity 90 270 > th dose dependent rect. 5 11
725 299.17 humidity 80 1440 < th dose independent rect. 18 1
726 299.17 wind 7 90 < th dose independent rect. 2 17
748 299.25 atmosphere 1005 4320 < th dose independent rect. 10 1
749 299.25 humidity 90 270 > th dose dependent rect. 5 8
784 299.38 atmosphere 1005 4320 < th dose independent rect. 7 5
813 299.42 atmosphere 995 30 > th dose dependent rect. 9 17
818 299.45 wind 1 4320 > th dose dependent rect. 23 11
823 299.46 wind 9 14400 > th dose dependent rect. 17 21
825 299.47 humidity 90 720 > th dose dependent rect. 22 5
829 299.48 radiation 10 1440 > th dose independent sin 18 NA
830 299.48 humidity 70 720 > th dose independent rect. 18 3
840 299.54 humidity 80 1440 > th dose independent rect. 7 13
845 299.55 radiation 30 4320 > th dose independent rect. 16 16
846 299.55 humidity 50 4320 > th dose independent rect. 15 20
854 299.57 humidity 60 4320 < th dose dependent sin 11 NA
860 299.59 wind 1 14400 > th dose independent rect. 1 1
867 299.60 humidity 50 4320 < th dose independent rect. 15 20
871 299.61 humidity 80 1440 > th dose independent rect. 4 16
876 299.63 humidity 90 270 > th dose dependent rect. 6 4
878 299.64 wind 1 4320 > th dose dependent rect. 1 9
900 299.69 radiation 40 4320 > th dose independent rect. 7 1
901 299.69 atmosphere 1005 720 < th dose independent rect. 10 2
918 299.69 radiation 40 4320 > th dose dependent rect. 7 1
935 299.70 humidity 50 4320 > th dose independent rect. 3 7
950 299.75 temperature 15 1440 > th dose independent rect. 21 20
971 299.80 wind 3 4320 < th dose dependent rect. 24 1
991 299.83 humidity 90 720 > th dose independent sin 8 NA
998 299.85 atmosphere 1005 4320 < th dose independent rect. 8 1