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Os11g0109700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function Cys-rich family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.71 (0.0404) R2 : 0.551
β1 : -2.17 (0.154) R2dD : 0.221 R2D : 0.125
β2 : 1.42 (0.101) R2dC : 0.199 R2C : 0.238
β3 : 1.69 (0.141) R2dE : 0.156 R2E : 0.096
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.338 (0.0863) R2dN8 : 0.0199 R2N8 : 0.0376
σ : 0.756
deviance : 263.21
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C
peak time of C : 2.86
E
wheather : temperature
threshold : 25.74
memory length : 4001
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
248.03 0.74 6.86 -3.35 1.46 2.25 1.86 -5.44 0.0579 3.18 25.5 3559 -- --
255.71 0.745 6.7 -2.27 1.45 1.7 1.65 -- 0.269 2.88 25.2 3389 -- --
258.95 0.749 6.85 -3.34 1.47 2.24 -- -5.32 0.0744 3.01 25.71 3507 -- --
263.21 0.756 6.71 -2.17 1.42 1.69 -- -- 0.338 2.86 25.74 4001 -- --
362.45 0.887 6.92 -3.55 -- 2.26 -- -4.4 -0.204 -- 24 2624 -- --
334.36 0.857 6.7 -1.62 1.58 -- 1.82 -- 0.367 2.79 -- -- -- --
345.63 0.871 6.7 -1.67 1.59 -- -- -- 0.356 2.64 -- -- -- --
366.11 0.891 6.75 -2.25 -- 1.83 -- -- 0.126 -- 23.9 2620 -- --
375.94 0.903 6.68 -- 1.46 0.961 -- -- 0.539 2.88 26.73 2717 -- --
492.59 1.04 6.69 -1.6 -- -- -- -- 0.396 -- -- -- -- --
418.76 0.957 6.66 -- 1.55 -- -- -- 0.542 2.62 -- -- -- --
487.64 1.03 6.67 -- -- 1.3 -- -- 0.509 -- 25.27 2628 -- --
559.98 1.1 6.65 -- -- -- -- -- 0.574 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 242.09 radiation 1 4320 > th dose independent rect. 18 12
2 243.07 radiation 10 4320 < th dose dependent rect. 18 12
4 243.29 wind 3 43200 < th dose independent rect. 3 1
7 243.59 wind 3 43200 > th dose independent rect. 3 1
8 243.79 radiation 30 4320 > th dose dependent rect. 15 18
11 243.90 radiation 1 4320 < th dose independent rect. 18 12
12 243.92 radiation 20 4320 < th dose independent rect. 16 16
13 244.00 radiation 1 4320 > th dose dependent rect. 17 13
14 244.20 radiation 10 4320 > th dose dependent rect. 16 16
18 244.54 radiation 20 4320 < th dose dependent rect. 18 10
20 244.56 radiation 1 4320 > th dose independent rect. 18 1
30 244.69 radiation 1 4320 < th dose independent rect. 18 7
44 245.39 wind 3 43200 > th dose dependent rect. 5 2
45 245.51 radiation 1 4320 < th dose independent rect. 18 1
46 245.54 radiation 1 4320 < th dose independent rect. 18 3
50 245.67 radiation 30 4320 < th dose independent rect. 15 18
52 245.73 wind 7 43200 > th dose independent rect. 10 1
53 245.79 radiation 10 4320 < th dose dependent rect. 18 7
58 246.12 radiation 30 4320 > th dose dependent rect. 7 2
73 246.23 wind 1 43200 > th dose dependent rect. 3 9
74 246.34 wind 3 43200 > th dose dependent rect. 3 11
77 246.36 radiation 40 4320 < th dose dependent rect. 20 10
79 246.54 radiation 40 4320 < th dose dependent rect. 22 8
80 246.56 wind 7 43200 < th dose independent rect. 10 1
81 246.64 wind 9 43200 < th dose dependent rect. 3 9
97 247.08 radiation 40 4320 < th dose independent sin 12 NA
101 247.14 radiation 20 4320 < th dose independent rect. 7 1
118 247.47 radiation 1 4320 > th dose dependent rect. 4 2
131 247.54 radiation 40 4320 < th dose dependent rect. 16 16
141 247.69 radiation 1 4320 > th dose dependent rect. 17 2
151 247.70 radiation 20 4320 < th dose independent rect. 20 12
154 247.72 radiation 20 4320 < th dose independent rect. 22 10
175 247.91 radiation 20 4320 < th dose independent rect. 24 8
181 247.98 radiation 20 4320 < th dose independent rect. 2 6
197 248.18 humidity 90 14400 < th dose independent rect. 12 16
209 248.39 wind 1 43200 > th dose dependent rect. 8 4
220 248.49 radiation 40 4320 < th dose independent rect. 8 1
225 248.51 humidity 90 43200 > th dose independent rect. 9 2
227 248.52 wind 7 43200 < th dose independent rect. 5 7
228 248.52 radiation 10 4320 < th dose dependent rect. 18 1
229 248.53 radiation 10 4320 < th dose dependent rect. 2 4
236 248.56 wind 9 43200 < th dose dependent rect. 8 4
242 248.59 wind 7 43200 < th dose independent rect. 9 3
252 248.66 humidity 90 43200 < th dose independent rect. 9 2
253 248.66 humidity 90 14400 < th dose independent rect. 18 9
257 248.69 radiation 40 4320 > th dose dependent sin 13 NA
263 248.72 radiation 1 4320 > th dose independent rect. 18 16
264 248.73 wind 3 43200 > th dose dependent sin 5 NA
266 248.75 radiation 10 4320 < th dose dependent rect. 4 2
274 248.79 wind 3 43200 > th dose independent rect. 3 8
312 248.99 wind 7 43200 > th dose independent rect. 5 8
314 249.00 radiation 40 4320 > th dose dependent rect. 13 2
388 249.33 wind 9 43200 < th dose dependent rect. 10 2
415 249.52 wind 7 43200 > th dose independent rect. 2 12
420 249.55 radiation 20 4320 > th dose independent rect. 16 16
422 249.56 radiation 40 4320 < th dose independent rect. 22 11
428 249.60 wind 7 43200 < th dose independent rect. 2 12
429 249.61 wind 5 43200 < th dose dependent rect. 3 1
436 249.65 radiation 40 4320 < th dose independent rect. 20 13
467 249.79 wind 1 43200 > th dose dependent rect. 3 1
469 249.80 wind 3 43200 < th dose independent rect. 3 8
506 249.90 wind 7 43200 > th dose independent rect. 23 15
533 250.05 wind 7 43200 < th dose independent rect. 23 15
558 250.16 radiation 30 4320 > th dose independent rect. 15 18
563 250.19 humidity 90 14400 < th dose independent sin 14 NA
575 250.24 radiation 1 4320 > th dose independent sin 11 NA
604 250.39 wind 9 43200 < th dose dependent rect. 3 4
617 250.47 radiation 1 4320 < th dose independent rect. 18 16
649 250.65 humidity 80 43200 > th dose dependent rect. 10 2
677 250.80 wind 3 43200 > th dose dependent rect. 20 18
696 250.92 radiation 30 14400 > th dose independent rect. 7 1
769 251.23 wind 7 43200 > th dose independent rect. 20 18
776 251.27 radiation 1 4320 < th dose independent sin 11 NA
813 251.57 temperature 25 4320 > th dose dependent rect. 8 1
818 251.60 wind 7 43200 < th dose independent rect. 20 18
831 251.67 wind 7 43200 > th dose independent sin 6 NA
837 251.73 wind 7 43200 < th dose independent sin 5 NA
865 251.88 temperature 25 4320 > th dose dependent rect. 6 3
889 251.97 humidity 70 14400 < th dose dependent rect. 18 1
940 252.10 temperature 25 4320 > th dose dependent rect. 6 5
989 252.41 radiation 1 4320 > th dose independent rect. 5 1