Os10g0567300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SH2 motif domain containing protein.
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Os10g0567300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SH2 motif domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.33 | 0.241 | 10.1 | -0.802 | 0.0175 | -0.566 | -0.59 | 7.06 | 0.0909 | 18.7 | 29.58 | 4265 | -- | -- |
| 33.7 | 0.27 | 9.98 | 0.39 | 0.0412 | -0.306 | -0.59 | -- | 0.23 | 19.1 | 18.4 | 4532 | -- | -- |
| 27.04 | 0.242 | 10.1 | -0.816 | 0.0442 | -0.581 | -- | 7.16 | 0.0755 | 14.7 | 29.53 | 4222 | -- | -- |
| 34.21 | 0.272 | 9.98 | 0.401 | 0.0893 | -0.297 | -- | -- | 0.226 | 14.9 | 18.4 | 4850 | -- | -- |
| 27.19 | 0.243 | 10.1 | -0.821 | -- | -0.588 | -- | 7.24 | 0.0839 | -- | 29.58 | 4223 | -- | -- |
| 35.1 | 0.278 | 9.97 | 0.56 | 0.0523 | -- | -0.576 | -- | 0.301 | 18.6 | -- | -- | -- | -- |
| 35.57 | 0.279 | 9.97 | 0.572 | 0.093 | -- | -- | -- | 0.3 | 14.9 | -- | -- | -- | -- |
| 32.97 | 0.267 | 9.93 | 0.986 | -- | 0.335 | -- | -- | 0.447 | -- | 32.26 | 47520 | -- | -- |
| 34.32 | 0.273 | 10 | -- | 0.0995 | -0.573 | -- | -- | 0.143 | 15.3 | 16.5 | 30840 | -- | -- |
| 36.07 | 0.281 | 9.97 | 0.568 | -- | -- | -- | -- | 0.298 | -- | -- | -- | -- | -- |
| 44.2 | 0.311 | 9.98 | -- | 0.0818 | -- | -- | -- | 0.237 | 14.9 | -- | -- | -- | -- |
| 34.87 | 0.275 | 10 | -- | -- | -0.568 | -- | -- | 0.143 | -- | 16.5 | 30787 | -- | -- |
| 44.58 | 0.312 | 9.98 | -- | -- | -- | -- | -- | 0.235 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.61 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 17 | 2 |
| 2 | 26.65 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 6 | 26.75 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 12 | 26.88 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 15 | 26.91 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 16 | 20 |
| 17 | 26.94 | radiation | 20.0 | 4320 | < th | dose independent | sin | 10 | NA |
| 21 | 26.96 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 16 | 18 |
| 23 | 26.97 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 5 | 7 |
| 34 | 26.98 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 39 | 26.99 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 13 | 2 |
| 56 | 27.08 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 12 | 4 |
| 85 | 27.11 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 13 | 2 |
| 90 | 27.11 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 1 | 8 |
| 96 | 27.12 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 4 | 5 |
| 100 | 27.12 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 23 | 10 |
| 106 | 27.13 | temperature | 25.0 | 4320 | > th | dose dependent | sin | 14 | NA |
| 120 | 27.15 | radiation | 1.0 | 4320 | > th | dose dependent | sin | 10 | NA |
| 128 | 27.18 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 132 | 27.19 | radiation | 1.0 | 4320 | > th | dose dependent | rect. | 4 | 7 |
| 143 | 27.20 | radiation | 1.0 | 4320 | > th | dose dependent | rect. | 5 | 5 |
| 226 | 27.26 | radiation | 40.0 | 4320 | < th | dose dependent | sin | 10 | NA |
| 259 | 27.27 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 364 | 27.33 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 380 | 27.36 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 399 | 27.37 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 13 | 20 |
| 421 | 27.39 | wind | 1.0 | 43200 | > th | dose independent | rect. | 2 | 5 |
| 435 | 27.39 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 18 | 22 |
| 445 | 27.40 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 7 | 9 |
| 453 | 27.40 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 20 | 20 |
| 466 | 27.41 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 475 | 27.41 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 487 | 27.42 | humidity | 50.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 548 | 27.45 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 17 | 17 |
| 558 | 27.46 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 5 |
| 561 | 27.46 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 653 | 27.51 | radiation | 40.0 | 4320 | < th | dose independent | sin | 11 | NA |
| 665 | 27.51 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 13 | 20 |
| 743 | 27.55 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 6 | 17 |
| 796 | 27.57 | temperature | 25.0 | 4320 | > th | dose dependent | no | NA | NA |
| 849 | 27.59 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 861 | 27.60 | temperature | 30.0 | 4320 | < th | dose independent | sin | 19 | NA |
| 922 | 27.62 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 18 | 22 |
| 949 | 27.63 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 8 | 8 |