BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0567300 Os10g0567300|AK070829
(349 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G78540.2 | chr1:29541195-29544574 REVERSE LENGTH=697 245 3e-65
AT1G17040.2 | chr1:5825109-5828056 FORWARD LENGTH=652 240 8e-64
>AT1G78540.2 | chr1:29541195-29544574 REVERSE LENGTH=697
Length = 696
Score = 245 bits (625), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 114/251 (45%), Positives = 174/251 (69%), Gaps = 15/251 (5%)
Query: 97 SFSDAEIFRYCLDGTHERSKFLRAAAPSVNEDDLIKLANQVSLYSGCTHHRNQILISKQL 156
+ SD+ IF+YCL +++ L+ + ++D++++ ANQVSLYSGC+HH QI ++++L
Sbjct: 420 TISDSTIFKYCLGNLIDKALLLKEITNNSSDDEVLEFANQVSLYSGCSHHSYQINMAREL 479
Query: 157 LQEGADIWSIISKNNERALWSSAVPEMKAKFLEIVHPSNRGLSEQDFEVLRGIAGCGDDI 216
+ EG + W +IS+NN+ W + V E++ F+ I S+R L+ QDFE+LR I+GC + I
Sbjct: 480 IAEGTNAWILISRNNQHVHWDNVVYEIEEHFMRISKCSSRSLTHQDFELLRRISGCYEYI 539
Query: 217 GRDEFDKLWSWLYPVAIALSKDKINRLWDFTAHRWIEGLITLQETENALRSSRDRLMKPG 276
++ F+K+W WL+PVA ++S+ IN +W ++ +WIEG IT +E E++L+ +PG
Sbjct: 540 TQENFEKMWCWLFPVAYSISRGLINGMWRSSSPKWIEGFITKEEAEHSLQGQ-----EPG 594
Query: 277 TFVLRFPTTRSWPHPDAGSLVVTYVGSDNSIHHRLLSLD--------VSDAKSGNLEDLL 328
TF+LRFP +R+WPHPDAGSLVVTYVG D ++HH+ L +D DAK L+D+L
Sbjct: 595 TFILRFPISRTWPHPDAGSLVVTYVGHDFALHHKQLKIDNICESSERYMDAKP--LQDML 652
Query: 329 LKEPELSQLGR 339
L EPELS+LGR
Sbjct: 653 LAEPELSRLGR 663
>AT1G17040.2 | chr1:5825109-5828056 FORWARD LENGTH=652
Length = 651
Score = 240 bits (612), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 115/254 (45%), Positives = 171/254 (67%), Gaps = 15/254 (5%)
Query: 97 SFSDAEIFRYCLDGTHERSKFLRAAAPSVNEDDLIKLANQVSLYSGCTHHRNQILISKQL 156
S D IF+YCL ER+ L+ + +++++ + A+QVSLYSGC+HH QI ++++L
Sbjct: 403 SIPDWIIFKYCLGNLTERALLLKEITNNSSDEEVSEFADQVSLYSGCSHHGYQIKMARKL 462
Query: 157 LQEGADIWSIISKNNERALWSSAVPEMKAKFLEIVHPSNRGLSEQDFEVLRGIAGCGDDI 216
+ EG + W++IS+N W + V E++ F+ I S+R L+ QDF++LR I GC + I
Sbjct: 463 IAEGTNAWNLISRNYRHVHWDNVVIEIEEHFMRIAKCSSRSLTHQDFDLLRRICGCYEYI 522
Query: 217 GRDEFDKLWSWLYPVAIALSKDKINRLWDFTAHRWIEGLITLQETENALRSSRDRLMKPG 276
++ F+ +W WL+PVA A+S+ IN +W + +WIEG +T +E E +L++ PG
Sbjct: 523 TQENFETMWCWLFPVASAVSRGLINGMWRSASPKWIEGFVTKEEAERSLQNQ-----VPG 577
Query: 277 TFVLRFPTTRSWPHPDAGSLVVTYVGSDNSIHHRLLSLD--------VSDAKSGNLEDLL 328
TF+LRFPT+RSWPHPDAGS+VVTYVG D IHHRLL+++ +DAK L+D+L
Sbjct: 578 TFILRFPTSRSWPHPDAGSVVVTYVGHDLVIHHRLLTINHICDSSERYTDAK--QLQDML 635
Query: 329 LKEPELSQLGRVDR 342
L EPELS+LGR+ R
Sbjct: 636 LAEPELSRLGRIIR 649
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.131 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,058,279
Number of extensions: 339413
Number of successful extensions: 924
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 920
Number of HSP's successfully gapped: 2
Length of query: 349
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 250
Effective length of database: 8,392,385
Effective search space: 2098096250
Effective search space used: 2098096250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)