Os10g0564600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Calcineurin B (Fragment).
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Os10g0564600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Calcineurin B (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.08 | 0.27 | 10.4 | -0.381 | 0.642 | -0.589 | 0.337 | 6.41 | 0.226 | 23.2 | 29.85 | 3992 | -- | -- |
| 35.76 | 0.281 | 10.3 | 0.633 | 0.692 | -0.152 | 0.283 | -- | 0.28 | 23.1 | 22.4 | 47520 | -- | -- |
| 33.57 | 0.27 | 10.4 | -0.384 | 0.64 | -0.585 | -- | 6.35 | 0.226 | 23.2 | 29.86 | 3981 | -- | -- |
| 36.1 | 0.282 | 10.3 | 0.622 | 0.69 | -0.15 | -- | -- | 0.279 | 23.1 | 22.4 | 47520 | -- | -- |
| 58.64 | 0.357 | 10.4 | -0.508 | -- | -0.788 | -- | 7.08 | 0.249 | -- | 29.86 | 3770 | -- | -- |
| 37.17 | 0.286 | 10.3 | 0.687 | 0.643 | -- | 0.265 | -- | 0.329 | 23 | -- | -- | -- | -- |
| 37.47 | 0.287 | 10.3 | 0.676 | 0.642 | -- | -- | -- | 0.328 | 23 | -- | -- | -- | -- |
| 55.63 | 0.349 | 10.2 | 0.767 | -- | 0.309 | -- | -- | 0.367 | -- | 27.73 | 47520 | -- | -- |
| 39.79 | 0.294 | 10.3 | -- | 0.619 | -0.541 | -- | -- | 0.134 | 23.1 | 16.4 | 47520 | -- | -- |
| 63.14 | 0.371 | 10.2 | 0.69 | -- | -- | -- | -- | 0.333 | -- | -- | -- | -- | -- |
| 49.51 | 0.329 | 10.3 | -- | 0.648 | -- | -- | -- | 0.253 | 23.1 | -- | -- | -- | -- |
| 65.04 | 0.376 | 10.3 | -- | -- | -0.55 | -- | -- | 0.149 | -- | 16.75 | 47520 | -- | -- |
| 75.71 | 0.406 | 10.3 | -- | -- | -- | -- | -- | 0.256 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.78 | temperature | 20.0 | 10 | > th | dose independent | rect. | 22 | 7 |
| 6 | 29.42 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 22 | 7 |
| 8 | 29.61 | temperature | 20.0 | 10 | > th | dose independent | rect. | 24 | 5 |
| 20 | 29.87 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 20 | 5 |
| 27 | 30.11 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 24 | 5 |
| 28 | 30.12 | humidity | 80.0 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 33 | 30.17 | temperature | 20.0 | 30 | > th | dose independent | rect. | 11 | 18 |
| 54 | 30.48 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 24 | 1 |
| 56 | 30.50 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 74 | 30.68 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 21 | 4 |
| 77 | 30.73 | temperature | 20.0 | 90 | > th | dose independent | rect. | 9 | 20 |
| 82 | 30.77 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 19 | 8 |
| 87 | 30.80 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 20 | 6 |
| 177 | 31.36 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 11 | 18 |
| 184 | 31.38 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 229 | 31.59 | temperature | 20.0 | 10 | > th | dose independent | rect. | 2 | 3 |
| 239 | 31.64 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 19 | 15 |
| 259 | 31.74 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 22 | 3 |
| 280 | 31.82 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 19 | 15 |
| 291 | 31.86 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 16 | 15 |
| 306 | 31.90 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 9 | 20 |
| 338 | 32.01 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 364 | 32.07 | wind | 9.0 | 30 | < th | dose dependent | rect. | 11 | 18 |
| 372 | 32.09 | temperature | 25.0 | 270 | < th | dose independent | rect. | 16 | 15 |
| 432 | 32.21 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 7 | 21 |
| 444 | 32.23 | wind | 3.0 | 30 | < th | dose dependent | rect. | 11 | 18 |
| 453 | 32.25 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 456 | 32.26 | humidity | 80.0 | 4320 | < th | dose independent | sin | 10 | NA |
| 477 | 32.31 | humidity | 80.0 | 4320 | > th | dose independent | sin | 10 | NA |
| 488 | 32.32 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 2 | 3 |
| 505 | 32.36 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 529 | 32.41 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 531 | 32.41 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 533 | 32.41 | radiation | 1.0 | 30 | > th | dose independent | rect. | 5 | 6 |
| 595 | 32.49 | radiation | 20.0 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 656 | 32.59 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 11 | 18 |
| 657 | 32.59 | wind | 3.0 | 30 | < th | dose dependent | rect. | 22 | 7 |
| 661 | 32.60 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 24 | 3 |
| 677 | 32.62 | wind | 3.0 | 30 | < th | dose dependent | rect. | 13 | 16 |
| 681 | 32.63 | temperature | 20.0 | 270 | < th | dose independent | rect. | 21 | 8 |
| 706 | 32.64 | temperature | 20.0 | 30 | > th | dose independent | rect. | 15 | 14 |
| 727 | 32.67 | radiation | 40.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 730 | 32.67 | radiation | 1.0 | 30 | > th | dose independent | rect. | 16 | 19 |
| 735 | 32.68 | humidity | 60.0 | 30 | > th | dose independent | rect. | 5 | 6 |
| 762 | 32.70 | wind | 3.0 | 30 | < th | dose dependent | rect. | 15 | 14 |
| 763 | 32.70 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 11 | 18 |
| 764 | 32.71 | temperature | 20.0 | 90 | < th | dose independent | sin | 10 | NA |
| 773 | 32.72 | radiation | 1.0 | 30 | > th | dose independent | sin | 9 | NA |
| 788 | 32.73 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 24 | 1 |
| 790 | 32.73 | wind | 3.0 | 30 | < th | dose dependent | rect. | 24 | 5 |
| 796 | 32.74 | radiation | 20.0 | 30 | < th | dose dependent | sin | 11 | NA |
| 858 | 32.80 | temperature | 25.0 | 270 | > th | dose independent | sin | 11 | NA |
| 886 | 32.82 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 6 |
| 889 | 32.82 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 6 |
| 894 | 32.83 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 16 | 2 |
| 922 | 32.86 | temperature | 10.0 | 10 | > th | dose independent | rect. | 5 | 6 |
| 925 | 32.86 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 5 | 6 |
| 926 | 32.86 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 5 | 6 |
| 940 | 32.87 | wind | 7.0 | 10 | < th | dose independent | rect. | 5 | 6 |
| 961 | 32.88 | wind | 9.0 | 30 | < th | dose dependent | rect. | 5 | 6 |
| 971 | 32.89 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 5 | 6 |
| 983 | 32.90 | temperature | 20.0 | 270 | > th | dose independent | rect. | 21 | 15 |
| 985 | 32.90 | temperature | 25.0 | 270 | < th | dose dependent | sin | 13 | NA |