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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0549900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, BED-type predicted domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.05 (0.0379) R2 : 0.273
β1 : 0.442 (0.139) R2dD : 0.0168 R2D : 0.0196
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.4 (0.257) R2dE : 0.142 R2E : 0.169
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 6.63 (0.921) R2dD*E : 0.0842 R2D*E : 0.114
γ1 : 0.057 (0.0812) R2dN8 : 0.00106 R2N8 : -0.00195
σ : 0.713
deviance : 231.92
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 20
memory length : 10
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 10
open length of G : 1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
229.96 0.706 3.05 0.435 0.177 2.36 0.362 6.55 0.0535 5.89 20 10 10 1
254.51 0.749 3.05 0.455 0.136 2.56 1 -- 0.072 7.63 20 10 10 1
230.2 0.712 3.05 0.436 0.182 2.37 -- 6.64 0.0518 5.13 20 10 10 1
256.63 0.751 3.05 0.475 0.179 2.61 -- -- 0.069 5.16 20 10 10 1
231.92 0.713 3.05 0.442 -- 2.4 -- 6.63 0.057 -- 20 10 10 1
304.69 0.818 3.06 0.457 0.277 -- 1.09 -- 0.0135 8 -- -- -- --
308.1 0.822 3.06 0.485 0.285 -- -- -- 0.0113 7.34 -- -- -- --
258.3 0.752 3.05 0.481 -- 2.63 -- -- 0.0741 -- 20 10 10 1
262.58 0.759 3.06 -- 0.187 2.61 -- -- 0.0162 5.06 20 10 10 1
312.4 0.826 3.07 0.49 -- -- -- -- 0.016 -- -- -- -- --
314.3 0.829 3.07 -- 0.289 -- -- -- -0.0427 7.23 -- -- -- --
264.42 0.76 3.07 -- -- 2.64 -- -- 0.0208 -- 20 10 10 1
318.73 0.833 3.08 -- -- -- -- -- -0.0383 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 229.96 radiation 20 10 < th dose independent rect. 10 1
3 245.80 radiation 30 10 < th dose dependent rect. 9 1
63 267.73 temperature 30 10 < th dose dependent rect. 8 3
77 271.06 wind 3 90 > th dose dependent rect. 8 1
78 271.28 temperature 20 270 < th dose dependent rect. 5 15
92 272.64 temperature 20 270 < th dose dependent rect. 6 2
93 272.65 temperature 20 270 < th dose dependent rect. 5 4
109 273.56 temperature 20 270 < th dose independent rect. 5 15
123 274.05 temperature 25 10 < th dose independent rect. 10 1
127 274.38 wind 3 90 > th dose independent rect. 8 1
140 275.03 atmosphere 1005 10 > th dose dependent rect. 9 1
155 276.72 temperature 20 270 < th dose independent rect. 5 4
181 278.49 temperature 20 270 < th dose independent rect. 6 1
214 280.42 wind 5 90 > th dose dependent rect. 1 8
217 280.61 wind 5 90 > th dose dependent rect. 17 17
224 281.12 temperature 20 270 > th dose independent sin 0 NA
229 281.62 radiation 20 10 < th dose independent rect. 9 18
232 281.79 radiation 30 90 < th dose independent rect. 19 15
244 282.30 wind 1 90 > th dose dependent rect. 4 6
257 282.60 wind 7 90 > th dose independent rect. 2 7
268 282.68 wind 7 90 > th dose dependent rect. 7 2
278 282.76 temperature 20 270 < th dose independent sin 0 NA
303 283.56 wind 5 90 > th dose independent rect. 24 10
313 284.22 temperature 20 270 < th dose dependent sin 23 NA
324 284.35 radiation 30 90 < th dose independent rect. 17 17
326 284.37 wind 5 90 > th dose independent rect. 17 17
353 284.96 temperature 10 720 > th dose dependent rect. 24 6
382 285.36 temperature 30 720 < th dose dependent rect. 22 12
386 285.44 atmosphere 1005 30 > th dose independent rect. 8 2
392 285.53 temperature 15 720 > th dose dependent rect. 3 1
403 285.69 wind 1 30 < th dose independent rect. 9 1
414 285.83 radiation 30 90 < th dose independent rect. 21 13
422 285.94 radiation 20 10 < th dose independent rect. 9 15
423 285.95 wind 5 10 > th dose independent rect. 2 8
447 286.15 radiation 40 720 < th dose independent rect. 22 12
454 286.26 temperature 20 1440 < th dose independent rect. 6 16
459 286.31 temperature 20 1440 > th dose independent rect. 6 16
484 286.49 humidity 80 90 < th dose dependent rect. 7 2
505 286.65 wind 1 30 < th dose dependent rect. 9 1
506 286.66 temperature 25 720 < th dose dependent rect. 22 19
516 286.80 temperature 30 720 < th dose dependent rect. 22 5
526 286.84 wind 1 270 > th dose dependent rect. 5 2
553 286.98 radiation 30 10 < th dose dependent rect. 9 18
570 287.06 temperature 20 1440 > th dose independent sin 22 NA
578 287.10 temperature 25 720 < th dose dependent rect. 22 15
592 287.16 humidity 80 90 < th dose dependent rect. 5 4
599 287.23 temperature 20 1440 < th dose independent sin 22 NA
600 287.23 temperature 20 1440 > th dose independent rect. 6 1
627 287.38 temperature 30 720 < th dose dependent rect. 22 9
628 287.40 temperature 20 1440 < th dose independent rect. 6 1
639 287.45 humidity 60 10 > th dose independent rect. 8 2
666 287.60 temperature 30 720 < th dose dependent rect. 22 7
689 287.75 temperature 20 720 > th dose independent rect. 3 9
703 287.86 humidity 90 90 < th dose independent rect. 8 1
747 288.04 temperature 20 270 > th dose independent rect. 3 12
766 288.10 humidity 90 90 < th dose independent rect. 7 3
768 288.10 radiation 40 30 < th dose independent rect. 8 12
778 288.16 temperature 20 720 > th dose independent rect. 24 14
814 288.35 atmosphere 1005 270 > th dose dependent rect. 6 1
844 288.53 humidity 90 10 < th dose independent rect. 8 2
853 288.55 temperature 20 720 > th dose independent rect. 5 8
858 288.56 temperature 20 720 < th dose dependent rect. 1 1
860 288.57 temperature 25 720 < th dose dependent sin 6 NA
887 288.71 radiation 40 720 < th dose independent rect. 5 5
924 288.86 temperature 20 1440 > th dose independent rect. 6 10
949 288.91 temperature 20 720 < th dose independent rect. 22 22
965 288.97 radiation 40 30 < th dose independent rect. 8 15