BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0549900 Os10g0549900|AK122139
         (195 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G22220.1  | chr3:7839808-7842358 REVERSE LENGTH=762             49   1e-06
AT4G15020.1  | chr4:8575806-8578372 FORWARD LENGTH=769             49   1e-06
AT3G17450.1  | chr3:5972793-5975684 REVERSE LENGTH=878             49   2e-06

>AT3G22220.1 | chr3:7839808-7842358 REVERSE LENGTH=762
          Length = 761

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 29 DPAWAHCFCPDITKKHHLRCKYCDKVCT-AGITRIKYHLAGIKGFNTTKCQKVPSPVQ 85
          D AW HC       +  +RC YC K+    GITR+K HLAG KG   T C +VP  V+
Sbjct: 16 DSAWKHCEVYKYGDRVQMRCLYCRKMFKGGGITRVKEHLAGKKG-QGTICDQVPDEVR 72



>AT4G15020.1 | chr4:8575806-8578372 FORWARD LENGTH=769
          Length = 768

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 29 DPAWAHCFCPDITKKHHLRCKYCDKVCT-AGITRIKYHLAGIKGFNTTKCQKVPSPVQ 85
          D AW HC       +  +RC YC K+    GITR+K HLAG KG   T C +VP  V+
Sbjct: 16 DNAWKHCEIYKYGDRLQMRCLYCRKMFKGGGITRVKEHLAGKKG-QGTICDQVPEDVR 72



>AT3G17450.1 | chr3:5972793-5975684 REVERSE LENGTH=878
          Length = 877

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 29 DPAWAHCFCPDITKKHHLRCKYCDKVCTAGITRIKYHLAGIKGFNTTKCQKVPSPVQQEM 88
          DP W H    D  KK  ++C YC K+ + GI R+K HLA + G   T C K P  V   M
Sbjct: 11 DPGWEHGVAQDQRKKK-VKCNYCGKIVSGGIYRLKQHLARVSG-EVTYCDKSPEEVCMRM 68




 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 29  DPAWAHCFCPDITKKHHLRCKYCDKVCTAGITRIKYHLAGIKGFNTTKCQKVPSPV 84
           DP W H    D  +K  ++C YC+K+ + GI R K HLA I G     C+  P  V
Sbjct: 133 DPGWEHGIAQD-ERKKKVKCNYCNKIVSGGINRFKQHLARIPG-EVAPCKTAPEEV 186



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.310    0.125    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,086,867
Number of extensions: 151085
Number of successful extensions: 337
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 337
Number of HSP's successfully gapped: 4
Length of query: 195
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 102
Effective length of database: 8,556,881
Effective search space: 872801862
Effective search space used: 872801862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 109 (46.6 bits)