FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0548100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.9 (0.0452) R2 : 0.728
β1 : 3.5 (0.166) R2dD : 0.269 R2D : 0.197
β2 : 2.61 (0.107) R2dC : 0.367 R2C : 0.378
β3 : 1.58 (0.106) R2dE : 0.145 R2E : 0.114
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.219 (0.1) R2dN8 : 0.00369 R2N8 : -0.024
σ : 0.834
deviance : 320.32
__
_____
C
peak time of C : 13.2
E
wheather : temperature
threshold : 19.7
memory length : 1340
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 5.47
open length of G : 0.882

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
317.31 0.837 4.9 3.61 2.65 1.52 0.438 -0.655 0.215 13.3 19.7 1348 5.4 0.939
320.84 0.834 4.91 3.57 2.65 1.52 0.411 -- 0.228 13.3 19.7 1346 5.4 0.95
317.91 0.83 4.9 3.62 2.64 1.53 -- -0.637 0.215 13.3 19.68 1343 5.42 0.923
320.32 0.834 4.9 3.5 2.61 1.58 -- -- 0.219 13.2 19.7 1340 5.47 0.882
708.38 1.24 4.91 3.74 -- 2.33 -- -0.876 0.279 -- 19.69 2055 5.52 0.878
464.51 1.01 5.03 2.95 2.73 -- 0.394 -- -0.305 13.3 -- -- -- --
465.15 1.01 5.02 2.97 2.73 -- -- -- -0.302 13.3 -- -- -- --
469.61 1.01 4.93 3.28 -- 2.73 -- -- -0.484 -- 26.4 2151 5.63 1.13
614.28 1.15 4.9 -- 2.56 1.42 -- -- -0.119 12.8 19.45 1347 5.5 0.54
924.04 1.42 5.06 2.86 -- -- -- -- -0.359 -- -- -- -- --
697.15 1.24 5.1 -- 2.68 -- -- -- -0.633 13.3 -- -- -- --
681.03 1.22 5.13 -- -- 2.11 -- -- -0.677 -- 37.62 668 6.05 1.73
1139.83 1.58 5.14 -- -- -- -- -- -0.676 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 331.26 temperature 30.0 270 < th dose dependent rect. 19 6
2 334.13 temperature 20.0 1440 < th dose independent rect. 5 2
3 335.18 temperature 30.0 90 < th dose dependent rect. 21 6
5 335.87 temperature 20.0 1440 > th dose independent rect. 5 2
7 337.81 radiation 1.0 14400 > th dose independent rect. 6 11
8 338.08 radiation 1.0 14400 < th dose independent rect. 6 11
12 339.76 temperature 30.0 270 < th dose dependent rect. 21 3
15 340.33 radiation 1.0 14400 < th dose independent rect. 24 17
18 340.36 radiation 1.0 14400 > th dose independent rect. 4 13
31 340.46 radiation 1.0 14400 < th dose independent rect. 3 14
59 341.90 humidity 90.0 14400 > th dose dependent rect. 5 2
61 342.30 humidity 80.0 43200 < th dose independent rect. 18 1
95 344.52 precipitation 0.1 43200 < th dose independent rect. 1 7
96 344.52 precipitation 0.1 43200 < th dose dependent rect. 1 7
98 344.73 temperature 10.0 1440 > th dose dependent rect. 5 1
102 344.77 precipitation 0.1 43200 > th dose dependent rect. 1 7
103 344.91 precipitation 0.1 43200 > th dose independent rect. 1 7
104 344.94 radiation 1.0 14400 > th dose independent sin 2 NA
107 345.06 radiation 1.0 14400 < th dose independent sin 2 NA
115 345.29 radiation 1.0 14400 < th dose dependent rect. 5 12
117 345.32 radiation 1.0 14400 > th dose independent rect. 11 20
123 345.54 radiation 1.0 14400 < th dose dependent rect. 22 19
124 345.55 temperature 25.0 1440 < th dose dependent rect. 5 1
125 345.55 radiation 1.0 14400 < th dose dependent rect. 24 17
131 345.63 radiation 1.0 14400 < th dose dependent rect. 3 14
137 345.72 radiation 1.0 14400 > th dose independent rect. 18 13
144 345.92 radiation 1.0 14400 < th dose independent rect. 9 8
152 346.01 humidity 80.0 43200 > th dose independent rect. 18 1
156 346.09 temperature 20.0 90 > th dose independent rect. 16 14
159 346.22 radiation 1.0 14400 < th dose independent rect. 11 20
161 346.31 radiation 1.0 14400 > th dose independent rect. 9 8
174 346.52 humidity 80.0 14400 > th dose dependent rect. 22 9
229 346.99 temperature 30.0 270 < th dose dependent rect. 23 1
243 347.10 radiation 1.0 14400 > th dose independent rect. 6 23
244 347.14 radiation 1.0 14400 > th dose independent no NA NA
305 347.22 radiation 1.0 14400 < th dose independent rect. 24 7
308 347.26 radiation 1.0 14400 > th dose independent rect. 4 3
338 347.45 radiation 1.0 14400 < th dose independent rect. 3 4
365 347.58 radiation 1.0 14400 > th dose independent rect. 14 23
409 347.81 radiation 1.0 14400 < th dose independent no NA NA
412 347.82 radiation 1.0 14400 < th dose independent rect. 4 21
460 347.91 temperature 25.0 1440 < th dose dependent rect. 3 6
461 347.95 humidity 80.0 43200 > th dose independent rect. 17 3
469 348.04 radiation 1.0 14400 < th dose independent rect. 6 23
502 348.26 radiation 1.0 14400 < th dose independent rect. 14 23
515 348.39 humidity 90.0 14400 < th dose independent rect. 23 2
518 348.41 precipitation 0.1 43200 < th dose independent rect. 6 2
520 348.41 precipitation 0.1 43200 < th dose dependent rect. 6 2
531 348.43 wind 1.0 14400 > th dose independent rect. 22 1
654 349.44 radiation 1.0 14400 > th dose independent sin 11 NA
681 349.62 precipitation 0.1 43200 > th dose dependent rect. 6 2
699 349.76 precipitation 0.1 43200 > th dose independent rect. 6 2
732 349.90 radiation 20.0 90 < th dose dependent rect. 24 23
784 350.17 temperature 30.0 10 < th dose dependent rect. 21 7
801 350.23 temperature 25.0 270 < th dose dependent rect. 6 19
842 350.53 radiation 1.0 14400 < th dose dependent sin 2 NA
857 350.55 humidity 90.0 14400 > th dose dependent rect. 23 2
884 350.68 wind 1.0 14400 < th dose dependent rect. 23 3
907 350.79 radiation 1.0 14400 < th dose independent rect. 11 15
937 350.97 wind 1.0 14400 < th dose dependent rect. 20 6
950 351.08 radiation 1.0 14400 < th dose dependent rect. 15 2
953 351.10 radiation 1.0 14400 < th dose dependent rect. 24 7
954 351.10 radiation 1.0 14400 < th dose dependent rect. 22 9
985 351.25 radiation 1.0 14400 < th dose dependent rect. 2 5
989 351.26 radiation 1.0 14400 < th dose dependent rect. 4 3
992 351.26 radiation 1.0 14400 < th dose dependent rect. 11 20
995 351.27 radiation 1.0 14400 < th dose dependent rect. 11 7