Os10g0545000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Mg2+ transporter protein, CorA-like family protein.
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Os10g0545000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Mg2+ transporter protein, CorA-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.38 | 0.207 | 11 | 0.255 | 1.12 | 1.8 | 0.716 | 0.562 | 0.141 | 19.1 | 0.5 | 723 | -- | -- |
| 19.49 | 0.206 | 11 | 0.277 | 1.11 | 1.79 | 0.358 | -- | 0.148 | 19.3 | 0.49 | 732 | -- | -- |
| 19.88 | 0.208 | 11 | 0.28 | 1.15 | 1.84 | -- | -0.13 | 0.168 | 19 | 0.5501 | 722 | -- | -- |
| 19.81 | 0.207 | 11 | 0.263 | 1.06 | 1.72 | -- | -- | 0.146 | 19.3 | 0.5 | 730 | -- | -- |
| 32.59 | 0.267 | 11 | 0.145 | -- | 0.319 | -- | 0.0391 | 0.0883 | -- | 0.5501 | 722 | -- | -- |
| 25 | 0.234 | 11 | 0.117 | 0.569 | -- | 0.162 | -- | 0.0744 | 2.64 | -- | -- | -- | -- |
| 25.09 | 0.235 | 11 | 0.113 | 0.57 | -- | -- | -- | 0.0735 | 2.66 | -- | -- | -- | -- |
| 23.08 | 0.224 | 11 | 0.0565 | -- | 0.511 | -- | -- | 0.0449 | -- | 0.64 | 398 | -- | -- |
| 21.53 | 0.216 | 11 | -- | 1.04 | 1.7 | -- | -- | 0.122 | 19.3 | 0.5 | 726 | -- | -- |
| 44.05 | 0.31 | 11 | 0.137 | -- | -- | -- | -- | 0.0879 | -- | -- | -- | -- | -- |
| 25.43 | 0.236 | 11 | -- | 0.572 | -- | -- | -- | 0.0609 | 2.66 | -- | -- | -- | -- |
| 23.29 | 0.225 | 11 | -- | -- | 0.535 | -- | -- | 0.0786 | -- | 0.67 | 404 | -- | -- |
| 44.55 | 0.312 | 11 | -- | -- | -- | -- | -- | 0.0726 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.77 | radiation | 1 | 1440 | < th | dose independent | sin | 16 | NA |
| 2 | 18.77 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 12 |
| 7 | 18.78 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 9 |
| 8 | 18.78 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 22 | 18.79 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 3 |
| 23 | 18.79 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 6 |
| 25 | 18.79 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 40 | 18.80 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 9 |
| 45 | 18.80 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 50 | 18.81 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 6 |
| 57 | 18.81 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 58 | 18.81 | radiation | 1 | 1440 | < th | dose dependent | sin | 17 | NA |
| 73 | 18.84 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 82 | 18.85 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 92 | 18.85 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 7 |
| 193 | 18.94 | radiation | 1 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 201 | 18.96 | radiation | 1 | 1440 | > th | dose independent | sin | 16 | NA |
| 218 | 18.98 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 224 | 18.99 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 22 |
| 225 | 19.00 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 6 |
| 235 | 19.00 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 17 |
| 241 | 19.04 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 486 | 19.38 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 508 | 19.41 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 545 | 19.46 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 5 |
| 556 | 19.48 | radiation | 1 | 720 | < th | dose dependent | rect. | 23 | 20 |
| 559 | 19.49 | radiation | 1 | 720 | < th | dose independent | rect. | 20 | 23 |
| 564 | 19.50 | humidity | 60 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 587 | 19.52 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 613 | 19.54 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 21 |
| 626 | 19.55 | radiation | 1 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 632 | 19.56 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 684 | 19.61 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 14 |
| 708 | 19.63 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 23 |
| 754 | 19.68 | radiation | 1 | 720 | < th | dose independent | rect. | 23 | 20 |
| 808 | 19.73 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 18 |
| 812 | 19.74 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 840 | 19.77 | humidity | 90 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 853 | 19.79 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 857 | 19.79 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 860 | 19.79 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 10 |
| 924 | 19.82 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 6 |
| 962 | 19.85 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 988 | 19.86 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 12 |
| 990 | 19.86 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 18 |