Os10g0543500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Strictosidine synthase family protein.
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Os10g0543500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Strictosidine synthase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 437.4 | 0.983 | 6.59 | 5.25 | 1.06 | -3.88 | -0.0223 | 4.97 | 0.833 | 17.9 | 23.22 | 1274 | -- | -- |
| 453.12 | 0.991 | 6.76 | 3.95 | 1.05 | -3.35 | 0.364 | -- | 0.558 | 17.2 | 22.4 | 1278 | -- | -- |
| 437.21 | 0.974 | 6.59 | 5.22 | 1.06 | -3.87 | -- | 4.81 | 0.852 | 17.9 | 23 | 1271 | -- | -- |
| 449.95 | 0.988 | 6.75 | 3.81 | 1.06 | -3.41 | -- | -- | 0.462 | 17.7 | 22.6 | 1283 | -- | -- |
| 494.84 | 1.04 | 6.57 | 5.19 | -- | -3.96 | -- | 4.63 | 0.839 | -- | 23.02 | 1283 | -- | -- |
| 851.88 | 1.37 | 6.91 | 2.69 | 1.4 | -- | 0.315 | -- | -0.222 | 16.5 | -- | -- | -- | -- |
| 852.15 | 1.37 | 6.91 | 2.69 | 1.41 | -- | -- | -- | -0.22 | 16.5 | -- | -- | -- | -- |
| 507.42 | 1.05 | 6.72 | 3.84 | -- | -3.56 | -- | -- | 0.484 | -- | 22.7 | 1286 | -- | -- |
| 805.07 | 1.32 | 6.94 | -- | 1.1 | -2.44 | -- | -- | -0.333 | 17.5 | 24.92 | 1289 | -- | -- |
| 957.72 | 1.45 | 6.9 | 2.64 | -- | -- | -- | -- | -0.257 | -- | -- | -- | -- | -- |
| 1043.44 | 1.51 | 6.97 | -- | 1.36 | -- | -- | -- | -0.52 | 16.6 | -- | -- | -- | -- |
| 864.3 | 1.37 | 6.9 | -- | -- | -2.64 | -- | -- | -0.29 | -- | 24.64 | 1276 | -- | -- |
| 1141.5 | 1.58 | 6.96 | -- | -- | -- | -- | -- | -0.55 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 435.75 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 2 | 436.37 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 13 | 441.51 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 8 |
| 55 | 448.66 | temperature | 20 | 1440 | > th | dose dependent | sin | 19 | NA |
| 98 | 451.06 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 21 |
| 104 | 451.24 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 22 |
| 201 | 452.86 | temperature | 25 | 1440 | > th | dose dependent | rect. | 22 | 23 |
| 209 | 452.92 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 210 | 452.94 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 320 | 454.49 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 465 | 458.49 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 769 | 469.82 | wind | 5 | 43200 | > th | dose independent | rect. | 4 | 12 |
| 805 | 471.18 | wind | 5 | 43200 | < th | dose independent | rect. | 3 | 13 |
| 807 | 471.25 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 22 |
| 813 | 471.52 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 21 |
| 835 | 472.40 | wind | 5 | 43200 | > th | dose independent | rect. | 24 | 17 |
| 846 | 472.68 | wind | 5 | 43200 | > th | dose independent | sin | 2 | NA |
| 863 | 473.41 | wind | 5 | 43200 | < th | dose independent | rect. | 24 | 16 |
| 894 | 474.15 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 23 |
| 913 | 474.71 | wind | 5 | 43200 | > th | dose dependent | rect. | 17 | 23 |
| 915 | 474.75 | wind | 5 | 43200 | < th | dose independent | sin | 2 | NA |
| 924 | 474.95 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 23 |
| 989 | 476.46 | wind | 5 | 43200 | > th | dose dependent | rect. | 3 | 13 |
| 995 | 476.70 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 16 |