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Os10g0542900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : chitinase [Oryza sativa (japonica cultivar-group)].


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.3 (0.051) R2 : 0.574
β1 : -2.28 (0.191) R2dD : 0.184 R2D : 0.288
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.26 (0.412) R2dE : 0.488 R2E : -0.0199
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 16.4 (1.17) R2dD*E : 0.553 R2D*E : -0.403
γ1 : 0.161 (0.0981) R2dN8 : 0.00371 R2N8 : -0.045
σ : 0.813
deviance : 304.82
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 40.85
memory length : 4916
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 14
open length of G : 19

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
301.8 0.816 11.3 -2.18 0.16 4.97 -0.934 15.5 0.141 20.4 40.52 4911 14 19
432.5 0.969 11 -2.56 0.0345 2.62 2.03 -- 0.536 7.06 42.85 4435 15 19.1
303.86 0.812 11.3 -2.19 0.181 5.01 -- 15.7 0.155 20.6 40.68 4914 14 19
411.33 0.945 11 -2.8 0.0622 1.48 -- -- 0.493 3.27 40 4313 15.1 19.1
304.82 0.813 11.3 -2.28 -- 5.26 -- 16.4 0.161 -- 40.85 4916 14 19
446.52 0.991 11 -3.02 0.293 -- -0.549 -- 0.234 21.1 -- -- -- --
447.53 0.991 11 -3 0.294 -- -- -- 0.233 21.5 -- -- -- --
410.58 0.944 11 -2.74 -- 1.63 -- -- 0.496 -- 40 4313 15.1 19.1
505.84 1.05 10.9 -- 0.135 2.1 -- -- 0.484 14.2 30.43 29912 14.4 19.1
452.62 0.994 11 -2.99 -- -- -- -- 0.232 -- -- -- -- --
684.27 1.22 10.9 -- 0.296 -- -- -- 0.567 20.7 -- -- -- --
494.12 1.04 10.9 -- -- 2.35 -- -- 0.458 -- 30.14 30287 14.4 18.8
689.23 1.23 10.9 -- -- -- -- -- 0.565 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 306.72 wind 9.0 43200 < th dose independent rect. 18 1
2 307.03 wind 9.0 43200 > th dose independent rect. 18 1
3 307.33 wind 3.0 43200 < th dose dependent rect. 4 1
4 310.40 humidity 90.0 14400 < th dose independent rect. 6 1
5 313.24 wind 9.0 43200 > th dose dependent rect. 18 1
8 313.96 radiation 40.0 4320 > th dose dependent rect. 14 19
9 315.00 wind 5.0 14400 < th dose independent rect. 14 15
15 317.78 radiation 10.0 14400 < th dose independent rect. 13 1
16 318.25 wind 5.0 14400 > th dose independent rect. 14 15
17 318.32 wind 5.0 14400 > th dose independent rect. 14 17
19 319.46 radiation 40.0 4320 > th dose dependent rect. 14 1
39 320.86 radiation 10.0 43200 > th dose independent rect. 5 1
57 322.42 radiation 20.0 14400 < th dose independent rect. 3 5
58 322.43 radiation 20.0 14400 < th dose independent rect. 5 3
60 322.43 radiation 20.0 14400 < th dose independent rect. 1 7
62 322.47 radiation 20.0 14400 < th dose independent rect. 18 14
63 322.48 radiation 20.0 14400 < th dose independent rect. 22 10
71 323.47 wind 5.0 14400 < th dose independent rect. 18 1
96 324.52 precipitation 0.1 43200 > th dose dependent rect. 3 1
100 325.04 temperature 25.0 14400 > th dose dependent rect. 24 1
103 325.28 precipitation 0.1 43200 > th dose independent rect. 14 3
105 325.33 precipitation 0.1 43200 < th dose independent rect. 14 3
106 325.33 precipitation 0.1 43200 < th dose dependent rect. 14 3
110 325.86 wind 3.0 14400 > th dose dependent rect. 17 2
113 326.25 humidity 90.0 14400 > th dose independent rect. 6 1
114 326.26 wind 3.0 14400 > th dose dependent rect. 14 5
115 326.46 precipitation 0.1 43200 > th dose dependent rect. 14 3
121 326.67 wind 5.0 14400 < th dose independent rect. 14 6
122 326.72 wind 3.0 14400 > th dose dependent rect. 14 15
125 326.93 precipitation 0.1 43200 > th dose independent rect. 15 1
127 326.93 precipitation 0.1 43200 > th dose dependent rect. 15 1
132 327.30 wind 5.0 14400 > th dose independent rect. 18 1
134 327.40 wind 5.0 14400 > th dose independent rect. 14 5
137 327.49 precipitation 0.1 43200 < th dose independent rect. 15 1
138 327.49 precipitation 0.1 43200 < th dose dependent rect. 15 1
146 327.82 wind 5.0 14400 < th dose independent rect. 16 3
150 327.96 wind 5.0 14400 < th dose independent rect. 14 8
152 328.05 wind 5.0 14400 > th dose independent rect. 16 3
156 328.17 precipitation 0.1 43200 > th dose dependent rect. 19 1
159 328.55 wind 3.0 14400 > th dose dependent rect. 14 1
163 328.84 radiation 10.0 14400 > th dose independent rect. 12 2
170 329.13 radiation 20.0 14400 < th dose dependent rect. 13 1
175 329.51 humidity 90.0 43200 < th dose dependent rect. 11 1
198 330.41 wind 1.0 43200 < th dose independent rect. 2 4
203 330.42 wind 3.0 14400 > th dose dependent rect. 14 10
230 331.09 precipitation 0.1 43200 > th dose independent rect. 3 1
231 331.10 precipitation 0.1 43200 < th dose independent rect. 3 1
232 331.10 precipitation 0.1 43200 < th dose dependent rect. 3 1
248 331.63 atmosphere 1005.0 14400 > th dose independent rect. 14 1
257 331.89 wind 5.0 14400 < th dose independent sin 15 NA
260 332.00 radiation 20.0 14400 > th dose dependent rect. 7 1
261 332.04 wind 5.0 14400 < th dose independent rect. 14 1
280 332.70 precipitation 0.1 43200 > th dose independent rect. 19 1
298 333.12 precipitation 0.1 43200 < th dose independent rect. 19 1
299 333.12 precipitation 0.1 43200 < th dose dependent rect. 19 1
319 333.55 wind 7.0 14400 > th dose independent rect. 14 1
340 333.76 radiation 10.0 14400 < th dose independent rect. 5 9
343 333.78 radiation 10.0 14400 < th dose independent rect. 1 13
344 333.78 humidity 90.0 43200 < th dose dependent rect. 9 6
350 333.79 radiation 10.0 14400 < th dose independent rect. 19 19
364 334.05 atmosphere 1005.0 14400 < th dose independent rect. 14 1
371 334.17 radiation 10.0 14400 < th dose independent rect. 8 6
413 334.63 wind 5.0 14400 > th dose independent sin 15 NA
475 335.61 radiation 30.0 43200 > th dose independent rect. 16 1
496 335.71 atmosphere 1005.0 14400 > th dose independent rect. 5 13
509 335.93 humidity 50.0 43200 > th dose dependent rect. 9 1
515 336.05 radiation 40.0 4320 > th dose dependent rect. 7 3
536 336.31 temperature 25.0 14400 < th dose independent rect. 3 1
558 336.47 wind 9.0 14400 < th dose dependent rect. 14 1
601 337.20 humidity 80.0 14400 > th dose independent rect. 21 1
610 337.33 atmosphere 1005.0 14400 < th dose independent rect. 14 3
631 337.59 humidity 70.0 43200 < th dose dependent rect. 14 1
637 337.66 atmosphere 1005.0 14400 > th dose independent rect. 13 5
638 337.72 humidity 90.0 43200 < th dose dependent rect. 14 1
653 337.94 humidity 60.0 43200 < th dose independent rect. 14 1
679 338.18 radiation 20.0 14400 < th dose independent sin 9 NA
684 338.24 humidity 60.0 43200 > th dose independent rect. 8 9
692 338.34 atmosphere 1005.0 14400 > th dose independent rect. 5 2
736 338.81 radiation 40.0 4320 < th dose independent rect. 14 19
741 338.89 radiation 10.0 14400 < th dose independent sin 5 NA
752 338.97 atmosphere 1005.0 14400 < th dose independent rect. 5 1
787 339.24 atmosphere 1005.0 14400 < th dose independent rect. 5 13
805 339.32 humidity 80.0 14400 > th dose dependent rect. 6 1
828 339.55 temperature 25.0 14400 > th dose independent rect. 2 1
830 339.56 atmosphere 1005.0 14400 < th dose independent rect. 16 1
842 339.64 humidity 80.0 43200 > th dose dependent rect. 8 2
940 340.19 humidity 80.0 43200 < th dose independent rect. 9 2
951 340.23 humidity 70.0 43200 < th dose independent rect. 17 19
965 340.35 humidity 80.0 14400 > th dose independent rect. 20 3
971 340.36 wind 3.0 14400 > th dose dependent sin 16 NA
995 340.50 wind 5.0 14400 > th dose dependent sin 14 NA
996 340.50 humidity 80.0 43200 < th dose dependent sin 1 NA