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Os10g0542400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Expansin/Lol pI family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.78 (0.0531) R2 : 0.653
β1 : -5.22 (0.195) R2dD : 0.573 R2D : 0.489
β2 : 1.14 (0.127) R2dC : 0.0615 R2C : 0.0606
β3 : 1.1 (0.135) R2dE : 0.052 R2E : 0.0182
β4 : 2.17 (0.495) R2dD*C : 0.0148 R2D*C : -0.0114
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.775 (0.114) R2dN8 : 0.0479 R2N8 : -0.0291
σ : 0.997
deviance : 451.57
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_____
C
peak time of C : 13.5
E
wheather : atmosphere
threshold : 1006
memory length : 6
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 5.03
open length of G : 5.63

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
447.62 0.994 6.79 -5.26 1.13 1.08 2.27 -1.37 -0.797 13.2 1006 9 5.03 5.16
451.57 0.997 6.78 -5.22 1.14 1.1 2.17 -- -0.775 13.5 1006 6 5.03 5.63
466.94 1.01 6.79 -5.17 1.14 1.14 -- -1.11 -0.784 13.6 1006 5 5.07 5.75
470.54 1.02 6.78 -5.15 1.14 1.11 -- -- -0.763 13.6 1006 5 5.07 5.75
546.22 1.09 6.8 -5.22 -- 1.13 -- -1.21 -0.81 -- 1006 5 5.07 5.75
501.67 1.05 6.74 -5.14 1.25 -- 2.07 -- -0.642 11.9 -- -- -- --
520.24 1.07 6.73 -5.06 1.24 -- -- -- -0.633 11.8 -- -- -- --
550.52 1.1 6.79 -5.19 -- 1.1 -- -- -0.787 -- 1006 5 5.07 5.85
1165.9 1.6 6.64 -- 1.23 0.848 -- -- -0.161 13.3 1006 6 5.02 5.74
616.6 1.16 6.76 -5.1 -- -- -- -- -0.649 -- -- -- -- --
1194.86 1.62 6.61 -- 1.3 -- -- -- -0.0697 12 -- -- -- --
1256.88 1.65 6.68 -- -- 1.21 -- -- -0.277 -- 1008 5 4.84 6.06
1301.49 1.68 6.63 -- -- -- -- -- -0.0834 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 450.38 wind 1 14400 < th dose independent rect. 21 7
4 453.21 wind 1 14400 < th dose dependent rect. 21 7
5 453.68 wind 1 14400 < th dose independent rect. 22 5
9 454.57 wind 1 14400 < th dose dependent rect. 18 10
12 455.06 wind 1 14400 > th dose independent rect. 21 7
20 457.03 wind 1 43200 > th dose independent rect. 17 10
23 457.44 atmosphere 1005 90 > th dose dependent rect. 5 4
25 457.56 humidity 90 14400 < th dose dependent rect. 2 4
35 458.36 atmosphere 1005 10 > th dose dependent rect. 5 4
64 460.55 humidity 50 30 > th dose dependent rect. 6 14
65 460.59 atmosphere 1005 270 > th dose dependent rect. 5 1
67 460.70 wind 1 14400 < th dose dependent sin 14 NA
81 461.42 wind 3 14400 > th dose independent rect. 20 3
82 461.49 wind 3 14400 < th dose independent rect. 20 3
98 462.29 wind 5 14400 < th dose dependent rect. 21 1
109 462.93 atmosphere 1005 10 > th dose independent rect. 5 5
110 462.95 humidity 70 30 > th dose independent rect. 6 14
126 463.53 humidity 50 270 > th dose dependent rect. 15 18
133 463.79 wind 1 30 > th dose independent rect. 20 10
146 464.37 radiation 1 30 > th dose independent rect. 10 9
157 464.37 humidity 70 10 > th dose dependent rect. 18 2
168 464.64 radiation 10 43200 < th dose dependent rect. 10 1
182 465.05 wind 1 14400 < th dose dependent rect. 8 22
188 465.16 radiation 10 43200 < th dose dependent rect. 7 5
222 465.83 atmosphere 995 43200 > th dose independent rect. 5 6
225 465.89 wind 1 30 > th dose independent rect. 10 20
246 466.14 atmosphere 995 43200 < th dose dependent rect. 22 16
265 466.37 atmosphere 995 43200 > th dose independent rect. 4 8
267 466.41 atmosphere 995 43200 < th dose dependent rect. 1 12
270 466.42 atmosphere 995 43200 < th dose independent rect. 3 11
272 466.43 atmosphere 995 43200 < th dose independent rect. 4 8
280 466.49 atmosphere 995 43200 < th dose dependent rect. 2 9
286 466.57 atmosphere 1005 90 > th dose independent rect. 5 4
304 466.74 wind 9 43200 < th dose independent rect. 21 3
308 466.79 atmosphere 995 43200 < th dose independent rect. 5 4
315 466.84 atmosphere 995 43200 > th dose independent rect. 6 2
321 466.90 wind 9 43200 > th dose dependent rect. 1 1
330 467.02 humidity 70 43200 > th dose dependent rect. 7 2
336 467.10 atmosphere 995 43200 < th dose dependent rect. 5 3
337 467.10 atmosphere 995 43200 < th dose dependent rect. 3 6
351 467.22 humidity 70 43200 < th dose independent rect. 12 1
363 467.25 atmosphere 995 43200 < th dose dependent sin 6 NA
377 467.39 wind 1 14400 < th dose dependent rect. 17 18
381 467.44 wind 9 43200 > th dose independent rect. 21 3
384 467.48 humidity 70 30 > th dose independent rect. 4 16
387 467.51 radiation 40 43200 > th dose independent rect. 14 1
396 467.55 radiation 10 43200 < th dose dependent rect. 17 19
398 467.57 wind 1 14400 < th dose dependent rect. 19 17
406 467.61 humidity 50 270 > th dose dependent rect. 3 17
412 467.66 radiation 10 43200 > th dose independent rect. 15 21
414 467.68 temperature 25 10 > th dose dependent rect. 10 19
445 467.80 radiation 10 43200 > th dose independent rect. 15 19
454 467.87 radiation 10 43200 < th dose dependent rect. 1 11
468 467.92 radiation 10 43200 > th dose independent sin 12 NA
476 467.96 radiation 10 43200 < th dose dependent sin 2 NA
503 468.06 temperature 25 10 > th dose dependent rect. 10 12
516 468.13 radiation 10 43200 < th dose dependent rect. 6 13
518 468.13 radiation 10 43200 < th dose dependent rect. 6 20
542 468.18 temperature 25 10 > th dose dependent rect. 10 16
549 468.23 humidity 70 43200 > th dose independent rect. 12 1
550 468.23 wind 1 30 > th dose independent rect. 23 7
577 468.38 humidity 80 43200 > th dose independent rect. 19 2
622 468.53 humidity 50 14400 > th dose dependent rect. 4 1
634 468.60 wind 9 43200 > th dose independent rect. 1 1
647 468.64 humidity 50 30 > th dose dependent rect. 6 17
655 468.72 wind 1 14400 < th dose independent sin 14 NA
658 468.73 radiation 10 43200 > th dose independent rect. 11 21
662 468.75 humidity 80 43200 > th dose independent rect. 7 3
671 468.77 wind 1 14400 < th dose dependent rect. 21 15
699 468.85 radiation 10 43200 < th dose dependent rect. 24 19
706 468.86 radiation 10 43200 < th dose dependent no NA NA
799 469.03 wind 1 14400 > th dose independent rect. 8 1
806 469.07 humidity 80 90 > th dose independent rect. 18 1
813 469.16 humidity 90 10 < th dose dependent rect. 10 20
834 469.25 wind 9 43200 > th dose independent rect. 21 6
836 469.26 radiation 10 43200 > th dose independent rect. 6 12
851 469.27 radiation 10 43200 > th dose independent no NA NA
923 469.31 radiation 10 43200 < th dose dependent rect. 10 23
924 469.33 humidity 70 30 > th dose independent rect. 6 17
937 469.46 humidity 80 43200 < th dose independent rect. 19 2