Os10g0536100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transcription factor MADS56.
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Os10g0536100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Transcription factor MADS56.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.1 | 0.231 | 13.5 | -0.948 | 0.293 | 0.381 | -0.567 | 0.954 | 0.26 | 15 | 1004 | 13428 | -- | -- |
| 24.98 | 0.233 | 13.5 | -0.974 | 0.286 | 0.491 | -0.584 | -- | 0.261 | 15 | 1004 | 13923 | -- | -- |
| 25.01 | 0.233 | 13.5 | -0.974 | 0.305 | 0.419 | -- | 0.815 | 0.25 | 15.5 | 1004 | 13872 | -- | -- |
| 25.66 | 0.236 | 13.5 | -1.06 | 0.293 | 0.502 | -- | -- | 0.241 | 15.5 | 1004 | 13930 | -- | -- |
| 29.98 | 0.255 | 13.5 | -0.973 | -- | 0.423 | -- | 0.84 | 0.253 | -- | 1004 | 13466 | -- | -- |
| 29.38 | 0.254 | 13.5 | -0.974 | 0.301 | -- | -0.565 | -- | 0.209 | 15 | -- | -- | -- | -- |
| 30.34 | 0.258 | 13.5 | -0.986 | 0.307 | -- | -- | -- | 0.206 | 15.6 | -- | -- | -- | -- |
| 30.51 | 0.257 | 13.5 | -1.07 | -- | 0.522 | -- | -- | 0.239 | -- | 1004 | 13849 | -- | -- |
| 44.84 | 0.312 | 13.4 | -- | 0.309 | -0.534 | -- | -- | 0.47 | 15.6 | 1013 | 47520 | -- | -- |
| 35.58 | 0.279 | 13.5 | -0.999 | -- | -- | -- | -- | 0.198 | -- | -- | -- | -- | -- |
| 55.98 | 0.35 | 13.5 | -- | 0.326 | -- | -- | -- | 0.315 | 15.5 | -- | -- | -- | -- |
| 46.74 | 0.318 | 13.4 | -- | -- | -0.615 | -- | -- | 0.456 | -- | 1016 | 47520 | -- | -- |
| 61.92 | 0.367 | 13.5 | -- | -- | -- | -- | -- | 0.308 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.07 | wind | 7.0 | 14400 | > th | dose independent | rect. | 17 | 4 |
| 2 | 23.17 | wind | 7.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 4 | 23.19 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 17 | 4 |
| 5 | 23.20 | wind | 7.0 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 11 | 23.27 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 25 | 23.40 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 26 | 23.40 | wind | 9.0 | 14400 | > th | dose independent | rect. | 16 | 15 |
| 29 | 23.40 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 17 | 14 |
| 32 | 23.41 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 17 | 12 |
| 34 | 23.42 | wind | 7.0 | 14400 | > th | dose independent | rect. | 17 | 11 |
| 42 | 23.44 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 8 | 5 |
| 51 | 23.47 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 72 | 23.54 | wind | 7.0 | 14400 | < th | dose independent | rect. | 17 | 11 |
| 81 | 23.56 | wind | 7.0 | 14400 | < th | dose independent | rect. | 17 | 14 |
| 93 | 23.58 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 143 | 23.67 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 8 | 6 |
| 185 | 23.72 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 8 |
| 187 | 23.73 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 257 | 23.82 | atmosphere | 1005.0 | 14400 | > th | dose independent | sin | 0 | NA |
| 268 | 23.82 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 8 | 15 |
| 313 | 23.86 | atmosphere | 1005.0 | 14400 | < th | dose independent | sin | 23 | NA |
| 405 | 23.91 | atmosphere | 1010.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 417 | 23.92 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 444 | 23.95 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 6 |
| 445 | 23.96 | wind | 7.0 | 14400 | > th | dose independent | sin | 13 | NA |
| 470 | 23.97 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 482 | 23.98 | wind | 7.0 | 14400 | < th | dose independent | sin | 13 | NA |
| 485 | 23.98 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 519 | 24.00 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 521 | 24.00 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 5 |
| 534 | 24.00 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 557 | 24.02 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 7 | 13 |
| 601 | 24.05 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 615 | 24.05 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 20 | 9 |
| 634 | 24.07 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 644 | 24.07 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 10 |
| 652 | 24.07 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 705 | 24.09 | wind | 9.0 | 14400 | > th | dose dependent | sin | 11 | NA |
| 706 | 24.09 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 15 | 3 |
| 713 | 24.10 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 770 | 24.11 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 785 | 24.12 | wind | 9.0 | 14400 | > th | dose independent | rect. | 20 | 9 |
| 879 | 24.15 | atmosphere | 1010.0 | 14400 | < th | dose dependent | sin | 2 | NA |
| 894 | 24.16 | atmosphere | 1005.0 | 14400 | < th | dose independent | no | NA | NA |
| 909 | 24.16 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 11 | 23 |
| 927 | 24.17 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 16 | 7 |
| 939 | 24.17 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 16 | 23 |
| 940 | 24.17 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 19 | 23 |