Os10g0536000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SUMO E2 conjugating enzyme SCE1.
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Os10g0536000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to SUMO E2 conjugating enzyme SCE1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.91 | 0.225 | 13.7 | -0.168 | 0.747 | 0.48 | -0.412 | 0.0859 | 0.288 | 16.4 | 21.6 | 1019 | -- | -- |
| 22.93 | 0.223 | 13.7 | -0.177 | 0.749 | 0.47 | -0.41 | -- | 0.289 | 16.4 | 21.71 | 1039 | -- | -- |
| 23.36 | 0.225 | 13.7 | -0.163 | 0.748 | 0.476 | -- | 0.113 | 0.286 | 16.4 | 21.7 | 1039 | -- | -- |
| 23.39 | 0.225 | 13.7 | -0.189 | 0.746 | 0.465 | -- | -- | 0.281 | 16.4 | 21.7 | 1023 | -- | -- |
| 47 | 0.319 | 13.7 | -0.236 | -- | 0.495 | -- | -0.236 | 0.22 | -- | 21.8 | 413 | -- | -- |
| 30.72 | 0.26 | 13.7 | -0.0059 | 0.731 | -- | -0.358 | -- | 0.425 | 16.8 | -- | -- | -- | -- |
| 31.06 | 0.261 | 13.7 | -0.00761 | 0.729 | -- | -- | -- | 0.423 | 16.8 | -- | -- | -- | -- |
| 47.2 | 0.32 | 13.7 | -0.205 | -- | 0.498 | -- | -- | 0.251 | -- | 21.9 | 416 | -- | -- |
| 24.23 | 0.229 | 13.7 | -- | 0.744 | 0.416 | -- | -- | 0.315 | 16.4 | 21.8 | 998 | -- | -- |
| 59.17 | 0.359 | 13.7 | -0.035 | -- | -- | -- | -- | 0.404 | -- | -- | -- | -- | -- |
| 31.06 | 0.261 | 13.7 | -- | 0.729 | -- | -- | -- | 0.424 | 16.8 | -- | -- | -- | -- |
| 38.71 | 0.29 | 13.7 | -- | -- | 0.516 | -- | -- | 0.184 | -- | 25.09 | 245 | -- | -- |
| 59.2 | 0.359 | 13.7 | -- | -- | -- | -- | -- | 0.408 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.75 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 2 | 21.90 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 3 |
| 4 | 21.92 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 6 |
| 25 | 22.34 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 9 |
| 30 | 22.38 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 3 |
| 34 | 22.44 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 6 |
| 42 | 22.51 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 44 | 22.52 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 11 |
| 61 | 22.63 | temperature | 25 | 720 | < th | dose dependent | sin | 8 | NA |
| 114 | 22.80 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 19 |
| 121 | 22.86 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 10 |
| 153 | 22.94 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 8 |
| 162 | 22.97 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 167 | 22.98 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 6 |
| 204 | 23.08 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 212 | 23.10 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |
| 216 | 23.12 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 19 |
| 363 | 23.36 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 484 | 23.53 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 2 |
| 529 | 23.59 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 3 |
| 530 | 23.59 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 14 |
| 583 | 23.67 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 12 |
| 619 | 23.71 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 20 |
| 697 | 23.81 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 781 | 23.88 | temperature | 20 | 720 | > th | dose independent | rect. | 2 | 16 |
| 880 | 23.96 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 901 | 23.97 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 13 |