Os10g0533200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ornithine cyclodeaminase/mu-crystallin family protein.
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Os10g0533200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ornithine cyclodeaminase/mu-crystallin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.74 | 0.3 | 12.2 | 0.449 | 0.726 | -1.25 | 0.0598 | -2.04 | 0.269 | 16 | 26.2 | 2626 | -- | -- |
| 45.22 | 0.313 | 12.3 | -0.0141 | 0.664 | -1.11 | -0.0941 | -- | 0.222 | 16 | 33.2 | 3485 | -- | -- |
| 40.75 | 0.297 | 12.2 | 0.446 | 0.726 | -1.25 | -- | -2.03 | 0.268 | 16 | 26.22 | 2626 | -- | -- |
| 45.23 | 0.313 | 12.3 | -0.0151 | 0.662 | -1.11 | -- | -- | 0.227 | 16 | 33.1 | 3417 | -- | -- |
| 48.38 | 0.324 | 12.2 | 0.261 | -- | -1.5 | -- | -1.01 | 0.182 | -- | 30.2 | 302 | -- | -- |
| 67.04 | 0.384 | 12.2 | 0.438 | 0.636 | -- | -0.0619 | -- | 0.446 | 16.4 | -- | -- | -- | -- |
| 67.05 | 0.383 | 12.2 | 0.438 | 0.636 | -- | -- | -- | 0.446 | 16.4 | -- | -- | -- | -- |
| 49.48 | 0.328 | 12.3 | 0.0682 | -- | -1.51 | -- | -- | 0.171 | -- | 31.14 | 278 | -- | -- |
| 45.24 | 0.313 | 12.3 | -- | 0.659 | -1.11 | -- | -- | 0.229 | 16 | 33.09 | 3420 | -- | -- |
| 88.76 | 0.44 | 12.2 | 0.412 | -- | -- | -- | -- | 0.429 | -- | -- | -- | -- | -- |
| 72.1 | 0.397 | 12.2 | -- | 0.628 | -- | -- | -- | 0.397 | 16.4 | -- | -- | -- | -- |
| 49.59 | 0.328 | 12.3 | -- | -- | -1.53 | -- | -- | 0.16 | -- | 31.1 | 281 | -- | -- |
| 93.24 | 0.451 | 12.2 | -- | -- | -- | -- | -- | 0.383 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.92 | wind | 1 | 43200 | > th | dose independent | rect. | 20 | 3 |
| 3 | 38.04 | wind | 1 | 43200 | < th | dose independent | rect. | 20 | 4 |
| 17 | 38.93 | wind | 1 | 43200 | < th | dose dependent | rect. | 20 | 4 |
| 21 | 39.14 | wind | 3 | 43200 | < th | dose dependent | rect. | 22 | 2 |
| 26 | 39.35 | radiation | 1 | 43200 | > th | dose independent | rect. | 16 | 14 |
| 30 | 39.39 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 33 | 39.41 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 41 | 39.45 | radiation | 1 | 43200 | < th | dose independent | rect. | 16 | 14 |
| 70 | 39.53 | radiation | 1 | 43200 | > th | dose independent | sin | 14 | NA |
| 88 | 39.56 | humidity | 80 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 100 | 39.61 | humidity | 90 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 102 | 39.62 | radiation | 1 | 43200 | < th | dose independent | sin | 14 | NA |
| 115 | 39.63 | humidity | 80 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 153 | 39.70 | humidity | 80 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 157 | 39.72 | humidity | 80 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 205 | 39.83 | humidity | 50 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 231 | 39.90 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 265 | 39.99 | wind | 1 | 14400 | > th | dose independent | rect. | 6 | 18 |
| 268 | 39.99 | wind | 1 | 14400 | < th | dose dependent | rect. | 18 | 8 |
| 278 | 40.00 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 3 |
| 288 | 40.03 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 319 | 40.12 | wind | 1 | 14400 | < th | dose independent | rect. | 7 | 17 |
| 332 | 40.15 | wind | 1 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 347 | 40.16 | temperature | 25 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 356 | 40.18 | wind | 1 | 14400 | < th | dose dependent | rect. | 8 | 16 |
| 357 | 40.18 | wind | 1 | 14400 | < th | dose dependent | rect. | 8 | 18 |
| 365 | 40.21 | radiation | 1 | 43200 | < th | dose independent | rect. | 22 | 8 |
| 372 | 40.22 | radiation | 1 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 398 | 40.24 | radiation | 1 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 419 | 40.24 | wind | 1 | 14400 | < th | dose dependent | rect. | 10 | 4 |
| 423 | 40.25 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 9 |
| 431 | 40.26 | humidity | 80 | 43200 | > th | dose dependent | rect. | 20 | 7 |
| 434 | 40.27 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 440 | 40.28 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 461 | 40.30 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 9 |
| 464 | 40.30 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 13 |
| 497 | 40.34 | humidity | 90 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 502 | 40.34 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 9 |
| 522 | 40.37 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 6 |
| 532 | 40.39 | radiation | 1 | 43200 | > th | dose independent | no | NA | NA |
| 533 | 40.39 | radiation | 1 | 43200 | > th | dose independent | rect. | 4 | 15 |
| 595 | 40.40 | humidity | 50 | 43200 | > th | dose dependent | rect. | 17 | 10 |
| 613 | 40.41 | humidity | 50 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 614 | 40.42 | humidity | 90 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 615 | 40.42 | humidity | 80 | 43200 | > th | dose dependent | rect. | 1 | 2 |
| 625 | 40.43 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 9 |
| 626 | 40.43 | radiation | 1 | 43200 | < th | dose independent | rect. | 1 | 19 |
| 627 | 40.43 | radiation | 1 | 43200 | < th | dose independent | rect. | 1 | 22 |
| 628 | 40.43 | radiation | 1 | 43200 | < th | dose independent | rect. | 22 | 22 |
| 638 | 40.44 | radiation | 1 | 43200 | < th | dose independent | no | NA | NA |
| 639 | 40.44 | humidity | 90 | 43200 | < th | dose independent | rect. | 1 | 5 |
| 642 | 40.44 | radiation | 1 | 43200 | < th | dose independent | rect. | 4 | 15 |
| 683 | 40.44 | radiation | 1 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 699 | 40.45 | humidity | 50 | 43200 | > th | dose dependent | rect. | 18 | 5 |
| 724 | 40.47 | humidity | 90 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 836 | 40.55 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 6 |
| 841 | 40.55 | humidity | 50 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 886 | 40.59 | humidity | 90 | 43200 | < th | dose dependent | rect. | 18 | 4 |
| 887 | 40.59 | humidity | 50 | 43200 | > th | dose dependent | rect. | 20 | 7 |
| 968 | 40.66 | wind | 1 | 43200 | > th | dose independent | rect. | 10 | 14 |
| 969 | 40.66 | humidity | 80 | 43200 | > th | dose dependent | sin | 13 | NA |