BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0533200 Os10g0533200|AK106036
         (336 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G52810.1  | chr5:21399524-21400501 FORWARD LENGTH=326          223   9e-59

>AT5G52810.1 | chr5:21399524-21400501 FORWARD LENGTH=326
          Length = 325

 Score =  223 bits (569), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 127/333 (38%), Positives = 175/333 (52%), Gaps = 13/333 (3%)

Query: 1   MAAPPPPANQFVYIDAAALHSVLPFPSLISHLGAGLPAFAAGIHCPHRVSFXXXXXXXXX 60
           MAA P      V+I A +  S+L   +LI+H    LP  ++ I  P R ++         
Sbjct: 1   MAALP------VFIPAESFPSILSHETLINHFRTNLPKHSSTITSPVRQNYTVSSPSSLL 54

Query: 61  XXXXXXXXXHPSLPYLALKAVTSFPANSPR-LPSVHAAVSLFDSASGVPLASLDGXXXXX 119
                      SLPY+ +K VT FP NS + LP +H + +LF S +G  LA++DG     
Sbjct: 55  LMPSWSSSS--SLPYMGVKLVTYFPHNSSQNLPGIHGSYTLFSSTTGQTLATMDGTVLTL 112

Query: 120 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLSALPSISRILIWNRTXXXX 179
                                                  HL+A PS+ R++IWNRT    
Sbjct: 113 YRTSSVSGLGSKILARDDSQVLIMVGSGALAPHLIKS--HLAAKPSLRRVIIWNRTPQRA 170

Query: 180 XXXXXXXXX--XHPGVAVEEADSMDEAVSAADVVSCATGSQEPIVRGELLKPGAHLDLVG 237
                       H  ++ +  DS+D+ +   D++SCAT S  P+V+GE LKPG HLDLVG
Sbjct: 171 QELAETLSKDPQHKEISFDSHDSLDQIIPLGDIISCATNSTVPLVKGEFLKPGTHLDLVG 230

Query: 238 SFTPAMRECDDEALRRGRVFIDFEAAMQEAGELVGALQRGVLRREDVAGTLAELAAGSVA 297
           SF+  M+ECDD A++RG VF+D + AM EAGEL GA +RGV++RED+ G L EL  G   
Sbjct: 231 SFSHEMKECDDNAIQRGSVFVDNDTAMIEAGELAGAFERGVIKREDICGNLVELIKGDKE 290

Query: 298 GRRCDDEITVFKSVGTAVVDLLAAQLAYETYIA 330
           GR+   +ITVFKSVG+  VDLL AQL +ETY++
Sbjct: 291 GRKSSTDITVFKSVGSGTVDLLTAQLVHETYLS 323



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.133    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,276,797
Number of extensions: 176256
Number of successful extensions: 405
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 402
Number of HSP's successfully gapped: 2
Length of query: 336
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 237
Effective length of database: 8,392,385
Effective search space: 1988995245
Effective search space used: 1988995245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)