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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0520100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF295 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.94 (0.0482) R2 : 0.401
β1 : 2.19 (0.181) R2dD : 0.211 R2D : 0.0981
β2 : 1.51 (0.121) R2dC : 0.233 R2C : 0.117
β3 : -1.58 (0.179) R2dE : 0.123 R2E : -0.0814
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.674 (0.104) R2dN8 : 0.0754 R2N8 : 0.00245
σ : 0.9
deviance : 373.4
__
_____
C
peak time of C : 0.226
E
wheather : temperature
threshold : 24.9
memory length : 888
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
364.33 0.897 4.85 2.94 1.56 -1.98 0.801 3.69 0.851 0.0773 24.96 888 -- --
368.43 0.894 4.93 2.26 1.56 -1.68 1.09 -- 0.698 0.166 24.9 881 -- --
366.47 0.892 4.83 3.1 1.58 -2.02 -- 4.47 0.923 0.171 24.59 903 -- --
373.4 0.9 4.94 2.19 1.51 -1.58 -- -- 0.674 0.226 24.9 888 -- --
391.83 0.922 4.87 2.2 -- -2.98 -- -1.45 0.911 -- -3.838 4 -- --
430.08 0.972 4.96 1.83 1.21 -- 0.763 -- 0.539 1.19 -- -- -- --
432.47 0.974 4.96 1.8 1.21 -- -- -- 0.534 1.23 -- -- -- --
393.61 0.924 4.85 2.4 -- -3.01 -- -- 0.962 -- 3.477 8 -- --
491.92 1.03 5.01 -- 1.47 -1.11 -- -- 0.395 0.329 25.2 835 -- --
523 1.07 4.94 1.85 -- -- -- -- 0.559 -- -- -- -- --
518.29 1.06 5 -- 1.24 -- -- -- 0.333 1.29 -- -- -- --
527.47 1.07 4.89 -- -- -1.89 -- -- 0.645 -- 20.34 6 -- --
613.4 1.16 4.99 -- -- -- -- -- 0.354 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 352.34 temperature 30.0 10 < th dose dependent rect. 12 20
3 352.66 precipitation 0.1 43200 < th dose independent rect. 17 1
4 352.66 precipitation 0.1 43200 < th dose dependent rect. 17 1
5 352.88 precipitation 0.1 43200 > th dose independent rect. 17 1
6 353.32 precipitation 0.1 43200 > th dose dependent rect. 17 1
19 358.85 temperature 30.0 30 < th dose dependent rect. 17 15
25 359.80 temperature 25.0 720 > th dose dependent rect. 14 19
34 360.90 wind 7.0 43200 > th dose dependent rect. 17 4
38 361.13 wind 9.0 43200 > th dose independent rect. 17 4
44 361.43 temperature 25.0 720 > th dose dependent rect. 13 15
56 361.99 wind 7.0 43200 > th dose independent rect. 19 2
59 362.28 wind 9.0 43200 < th dose independent rect. 17 4
61 362.31 radiation 1.0 43200 < th dose dependent rect. 19 8
64 362.38 wind 9.0 43200 > th dose dependent rect. 17 13
68 362.44 wind 7.0 43200 < th dose independent rect. 19 2
81 362.97 radiation 1.0 1440 < th dose independent rect. 16 3
84 363.01 radiation 1.0 1440 < th dose independent rect. 16 5
86 363.08 radiation 1.0 1440 < th dose independent rect. 16 8
98 363.25 temperature 25.0 720 > th dose dependent sin 17 NA
100 363.28 radiation 1.0 1440 < th dose independent rect. 16 13
112 363.59 radiation 1.0 43200 < th dose dependent rect. 21 6
115 363.64 radiation 1.0 1440 < th dose dependent sin 18 NA
116 363.65 wind 9.0 43200 > th dose dependent rect. 17 6
117 363.66 radiation 1.0 1440 < th dose dependent rect. 8 11
118 363.67 radiation 1.0 1440 < th dose dependent rect. 8 13
125 363.74 radiation 1.0 1440 < th dose independent sin 16 NA
128 363.75 radiation 1.0 1440 < th dose independent rect. 17 1
129 363.75 radiation 1.0 1440 < th dose dependent rect. 8 16
137 363.83 radiation 1.0 1440 < th dose dependent rect. 13 6
138 363.84 radiation 1.0 1440 < th dose dependent rect. 13 8
173 364.00 radiation 1.0 1440 < th dose dependent rect. 8 20
183 364.06 radiation 1.0 1440 < th dose dependent rect. 15 4
189 364.08 radiation 1.0 1440 < th dose dependent rect. 15 6
192 364.09 wind 9.0 43200 > th dose dependent rect. 17 8
195 364.13 radiation 1.0 1440 < th dose dependent rect. 17 1
202 364.17 radiation 1.0 1440 < th dose dependent rect. 15 9
246 364.44 radiation 1.0 1440 < th dose dependent rect. 15 13
274 364.87 humidity 50.0 1440 > th dose dependent rect. 15 4
293 365.07 humidity 60.0 1440 > th dose dependent rect. 17 1
295 365.08 radiation 1.0 1440 < th dose independent rect. 13 6
298 365.10 radiation 1.0 1440 < th dose independent rect. 13 8
306 365.16 radiation 1.0 1440 < th dose independent rect. 13 11
311 365.19 radiation 1.0 1440 < th dose independent rect. 13 16
337 365.39 radiation 1.0 1440 < th dose independent rect. 10 9
343 365.41 radiation 1.0 1440 < th dose independent rect. 10 11
352 365.47 radiation 1.0 1440 < th dose independent rect. 10 14
356 365.48 radiation 1.0 1440 < th dose independent rect. 10 19
393 365.66 radiation 1.0 1440 > th dose independent rect. 16 3
410 365.69 humidity 50.0 1440 > th dose dependent rect. 13 6
443 365.87 radiation 1.0 43200 < th dose dependent rect. 24 3
466 366.07 wind 9.0 43200 > th dose independent rect. 17 8
468 366.09 wind 9.0 43200 > th dose independent rect. 17 13
476 366.21 radiation 1.0 1440 > th dose independent sin 16 NA
478 366.21 humidity 90.0 1440 < th dose dependent rect. 15 4
480 366.21 temperature 30.0 10 < th dose dependent rect. 10 22
484 366.29 temperature 10.0 720 > th dose dependent rect. 13 7
489 366.39 humidity 50.0 1440 > th dose dependent rect. 11 9
527 366.80 wind 9.0 43200 > th dose dependent rect. 19 6
532 366.83 radiation 1.0 1440 > th dose independent rect. 17 1
551 366.99 temperature 30.0 10 < th dose dependent rect. 1 23
566 367.08 radiation 1.0 43200 < th dose dependent rect. 1 1
567 367.08 wind 9.0 43200 > th dose dependent rect. 19 9
569 367.09 humidity 90.0 1440 < th dose dependent rect. 13 7
615 367.35 wind 9.0 43200 < th dose independent rect. 18 10
640 367.65 radiation 1.0 1440 > th dose independent rect. 10 9
651 367.66 radiation 1.0 1440 > th dose independent rect. 13 6
672 367.69 wind 9.0 43200 < th dose independent rect. 18 7
700 367.81 humidity 90.0 1440 < th dose dependent rect. 11 9
902 369.07 temperature 25.0 720 > th dose dependent no NA NA
904 369.10 humidity 50.0 1440 > th dose dependent sin 18 NA
910 369.15 temperature 25.0 720 > th dose dependent rect. 2 23
927 369.25 temperature 25.0 1440 > th dose dependent rect. 13 1
991 369.71 temperature 30.0 30 < th dose dependent rect. 19 23