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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0519800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF295 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.13 (0.0131) R2 : 0.00229
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0282 (0.0276) R2dN8 : 0.00295 R2N8 : 0.00229
σ : 0.247
deviance : 27.94
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
25.33 0.236 3.14 0.14 0.105 0.201 -0.0289 0.944 -0.0499 6.98 91 5914 -- --
26.52 0.24 3.14 0.101 0.125 0.234 -0.0319 -- -0.0781 7.13 92 7978 -- --
25.33 0.234 3.14 0.14 0.104 0.201 -- 0.945 -0.0497 7.1 91 5914 -- --
26.51 0.24 3.13 0.0923 0.121 0.223 -- -- -0.0751 7.41 91.99 8023 -- --
25.9 0.237 3.14 0.142 -- 0.201 -- 0.945 -0.0474 -- 91 5858 -- --
27.28 0.245 3.12 0.0607 0.103 -- -0.0544 -- -0.0234 6.81 -- -- -- --
27.29 0.245 3.12 0.06 0.103 -- -- -- -0.0232 7.04 -- -- -- --
27.09 0.242 3.13 0.0915 -- 0.229 -- -- -0.0668 -- 91.97 7133 -- --
26.73 0.241 3.14 -- 0.118 0.202 -- -- -0.0802 7.35 91.87 8021 -- --
27.84 0.247 3.12 0.0621 -- -- -- -- -0.0213 -- -- -- -- --
27.38 0.245 3.12 -- 0.104 -- -- -- -0.0299 7 -- -- -- --
27.3 0.243 3.14 -- -- 0.214 -- -- -0.0754 -- 91 7119 -- --
27.94 0.247 3.13 -- -- -- -- -- -0.0282 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 25.07 temperature 25.0 30 > th dose dependent rect. 22 1
2 25.07 humidity 80.0 14400 < th dose dependent rect. 3 6
3 25.08 humidity 90.0 30 < th dose dependent rect. 22 1
6 25.12 humidity 90.0 30 < th dose independent rect. 22 1
10 25.15 humidity 80.0 14400 < th dose dependent rect. 21 13
11 25.16 temperature 20.0 30 > th dose independent rect. 22 1
16 25.17 wind 1.0 30 > th dose independent rect. 22 1
17 25.17 wind 9.0 1440 < th dose independent rect. 23 1
19 25.17 temperature 10.0 1440 > th dose independent rect. 23 1
22 25.17 temperature 30.0 1440 < th dose independent rect. 23 1
26 25.17 humidity 50.0 1440 > th dose independent rect. 23 1
36 25.17 atmosphere 995.0 1440 > th dose independent rect. 23 1
37 25.17 radiation 1.0 1440 < th dose independent rect. 23 1
57 25.17 temperature 10.0 1440 > th dose independent rect. 24 23
60 25.17 atmosphere 1005.0 30 > th dose dependent rect. 22 1
61 25.17 radiation 1.0 1440 < th dose dependent rect. 23 1
68 25.18 wind 5.0 30 < th dose independent rect. 22 1
71 25.18 temperature 10.0 30 > th dose independent rect. 22 1
73 25.18 temperature 30.0 30 < th dose independent rect. 22 1
74 25.18 humidity 50.0 30 > th dose independent rect. 22 1
77 25.18 atmosphere 995.0 30 > th dose independent rect. 22 1
78 25.18 atmosphere 1005.0 30 > th dose independent rect. 22 1
79 25.18 atmosphere 1010.0 30 < th dose independent rect. 22 1
81 25.18 radiation 1.0 30 < th dose independent rect. 22 1
86 25.18 wind 9.0 30 < th dose independent rect. 23 23
87 25.18 temperature 10.0 30 > th dose independent rect. 23 23
88 25.18 atmosphere 995.0 30 > th dose dependent rect. 22 1
90 25.18 radiation 1.0 30 < th dose dependent rect. 22 1
96 25.19 precipitation 0.1 30 < th dose independent rect. 22 1
97 25.19 wind 7.0 30 < th dose dependent rect. 22 1
99 25.19 precipitation 0.1 4320 > th dose dependent rect. 21 1
100 25.19 precipitation 0.1 30 < th dose dependent rect. 22 1
104 25.20 precipitation 0.1 4320 > th dose independent rect. 20 2
105 25.20 wind 1.0 30 > th dose dependent rect. 22 1
108 25.21 humidity 50.0 30 > th dose dependent rect. 22 1
109 25.21 atmosphere 1015.0 30 < th dose dependent rect. 22 1
114 25.23 precipitation 0.1 4320 < th dose independent rect. 20 2
116 25.23 precipitation 0.1 4320 < th dose dependent rect. 20 2
120 25.25 humidity 70.0 14400 > th dose independent rect. 8 2
136 25.26 atmosphere 995.0 30 > th dose independent rect. 23 23
142 25.27 humidity 70.0 14400 < th dose independent rect. 8 2
164 25.31 atmosphere 995.0 720 > th dose independent rect. 23 16
168 25.32 temperature 30.0 30 < th dose dependent rect. 22 1
224 25.46 precipitation 0.1 4320 > th dose independent rect. 16 1
230 25.47 wind 1.0 4320 < th dose dependent rect. 19 2
232 25.48 precipitation 0.1 4320 > th dose dependent rect. 16 1
237 25.50 precipitation 0.1 4320 < th dose independent rect. 16 1
241 25.50 precipitation 0.1 4320 < th dose dependent rect. 16 1
260 25.52 humidity 80.0 14400 < th dose dependent sin 8 NA
261 25.52 humidity 70.0 4320 > th dose dependent rect. 3 8
267 25.53 atmosphere 1000.0 720 > th dose independent rect. 21 14
272 25.53 humidity 50.0 4320 > th dose dependent rect. 23 15
274 25.54 humidity 70.0 4320 > th dose independent rect. 10 1
275 25.54 humidity 60.0 14400 < th dose independent rect. 11 1
282 25.55 humidity 70.0 4320 > th dose independent rect. 8 9
286 25.55 atmosphere 995.0 14400 < th dose dependent rect. 17 13
325 25.57 humidity 70.0 4320 > th dose independent rect. 8 7
338 25.57 humidity 50.0 4320 > th dose dependent sin 5 NA
339 25.57 humidity 50.0 14400 > th dose dependent rect. 8 1
342 25.57 humidity 80.0 4320 > th dose dependent rect. 6 3
357 25.57 humidity 90.0 4320 < th dose dependent rect. 23 17
365 25.58 humidity 70.0 4320 < th dose independent rect. 8 9
401 25.59 humidity 70.0 4320 > th dose independent sin 1 NA
455 25.60 humidity 60.0 14400 < th dose independent rect. 10 3
476 25.60 atmosphere 995.0 14400 < th dose dependent sin 11 NA
501 25.61 atmosphere 995.0 14400 < th dose independent sin 9 NA
509 25.61 humidity 70.0 4320 < th dose independent rect. 8 7
574 25.62 humidity 50.0 4320 > th dose dependent rect. 11 2
598 25.63 wind 1.0 14400 < th dose independent rect. 4 3
609 25.63 atmosphere 1000.0 720 > th dose independent rect. 3 8
647 25.63 humidity 90.0 4320 < th dose dependent sin 5 NA
650 25.63 atmosphere 995.0 14400 < th dose dependent rect. 18 6
656 25.63 humidity 90.0 4320 < th dose dependent rect. 3 13
675 25.64 humidity 70.0 4320 < th dose independent sin 1 NA
678 25.64 humidity 70.0 4320 > th dose independent rect. 16 1
698 25.64 wind 1.0 14400 < th dose dependent rect. 6 1
798 25.66 humidity 70.0 4320 > th dose independent no NA NA
801 25.66 humidity 70.0 4320 < th dose independent rect. 14 3
872 25.66 humidity 70.0 4320 > th dose independent rect. 10 23
873 25.66 humidity 70.0 4320 > th dose independent rect. 14 23
874 25.66 humidity 70.0 4320 > th dose independent rect. 16 23
909 25.67 atmosphere 995.0 14400 > th dose independent sin 8 NA
913 25.67 wind 1.0 14400 > th dose independent rect. 4 3
916 25.67 humidity 70.0 4320 > th dose independent rect. 14 4
930 25.67 atmosphere 1000.0 720 > th dose independent rect. 23 10
955 25.67 humidity 80.0 4320 < th dose dependent rect. 11 2
979 25.68 precipitation 0.1 4320 < th dose independent rect. 18 1