Os10g0518900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to DNA excision repair protein ERCC-1 (EC 3.1.-.-) (AtERCC1) (AtRAD10) (Ultraviolet hypersensitive 7).
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Os10g0518900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to DNA excision repair protein ERCC-1 (EC 3.1.-.-) (AtERCC1) (AtRAD10) (Ultraviolet hypersensitive 7).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.54 | 0.202 | 9.51 | 0.187 | 0.32 | -0.444 | 0.0316 | 0.191 | 0.263 | 0.215 | 24.73 | 1164 | -- | -- |
| 18.56 | 0.201 | 9.51 | 0.141 | 0.319 | -0.423 | 0.0473 | -- | 0.252 | 0.207 | 24.74 | 1156 | -- | -- |
| 18.55 | 0.201 | 9.51 | 0.195 | 0.318 | -0.444 | -- | 0.225 | 0.265 | 0.238 | 24.72 | 1171 | -- | -- |
| 18.57 | 0.201 | 9.51 | 0.139 | 0.32 | -0.425 | -- | -- | 0.252 | 0.21 | 24.67 | 1158 | -- | -- |
| 23.08 | 0.224 | 9.49 | 0.233 | -- | -0.386 | -- | 0.326 | 0.28 | -- | 24.47 | 1580 | -- | -- |
| 24.31 | 0.231 | 9.52 | 0.011 | 0.232 | -- | -0.0392 | -- | 0.2 | 0.0631 | -- | -- | -- | -- |
| 24.32 | 0.231 | 9.52 | 0.0125 | 0.232 | -- | -- | -- | 0.201 | 0.0598 | -- | -- | -- | -- |
| 23.11 | 0.224 | 9.5 | 0.142 | -- | -0.354 | -- | -- | 0.259 | -- | 24.28 | 1580 | -- | -- |
| 19.04 | 0.203 | 9.51 | -- | 0.317 | -0.394 | -- | -- | 0.234 | 0.171 | 24.88 | 1148 | -- | -- |
| 27.72 | 0.246 | 9.52 | 0.0199 | -- | -- | -- | -- | 0.204 | -- | -- | -- | -- | -- |
| 24.33 | 0.231 | 9.52 | -- | 0.233 | -- | -- | -- | 0.199 | 0.0628 | -- | -- | -- | -- |
| 23.59 | 0.226 | 9.51 | -- | -- | -0.325 | -- | -- | 0.227 | -- | 24.97 | 1589 | -- | -- |
| 27.73 | 0.246 | 9.52 | -- | -- | -- | -- | -- | 0.202 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.55 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 2 | 18.58 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 3 |
| 4 | 18.60 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 13 |
| 6 | 18.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 11 |
| 40 | 18.85 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 14 |
| 43 | 18.85 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 19 |
| 106 | 18.93 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 143 | 18.97 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 17 |
| 163 | 18.99 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 18 |
| 230 | 19.03 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 19 |
| 279 | 19.06 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 373 | 19.12 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 5 |
| 392 | 19.14 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 7 |
| 403 | 19.14 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 459 | 19.19 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 6 |
| 469 | 19.19 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 18 |
| 471 | 19.20 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 4 |
| 490 | 19.21 | temperature | 10 | 720 | > th | dose dependent | sin | 17 | NA |
| 491 | 19.21 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 557 | 19.26 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 4 |
| 593 | 19.29 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 758 | 19.40 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 777 | 19.41 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 3 |
| 803 | 19.43 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 824 | 19.44 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 11 |
| 866 | 19.47 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 904 | 19.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 20 |
| 910 | 19.49 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 938 | 19.50 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 7 |
| 977 | 19.50 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 981 | 19.50 | temperature | 30 | 720 | < th | dose dependent | sin | 19 | NA |
| 982 | 19.50 | radiation | 20 | 1440 | > th | dose dependent | rect. | 16 | 1 |