BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0518900 Os10g0518900|AK070764
         (387 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05210.1  | chr3:1479591-1481823 FORWARD LENGTH=411            380   e-106

>AT3G05210.1 | chr3:1479591-1481823 FORWARD LENGTH=411
          Length = 410

 Score =  380 bits (977), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 176/265 (66%), Positives = 216/265 (81%), Gaps = 5/265 (1%)

Query: 102 KNAILVSHRQKGNPLLKHIRNARWTYADIVPDYVLGQSSCALYISLRYHLLHPDYLYYRI 161
           +NAILVSHRQKGNPLLKHIRN +W ++DI+PDYVLGQ+SCALY+SLRYHLLHPDYLY+RI
Sbjct: 123 RNAILVSHRQKGNPLLKHIRNVKWVFSDIIPDYVLGQNSCALYLSLRYHLLHPDYLYFRI 182

Query: 162 RELQKNFKLRVILCHIDVEDVVKPLHEVTRTSLLHDCTLLCGWSLEECGRYLETIKVYEN 221
           RELQKNFKL V+LCH+DVED VKPL EVT+T+LLHDCTLLC WS+ EC RYLETIKVYEN
Sbjct: 183 RELQKNFKLSVVLCHVDVEDTVKPLLEVTKTALLHDCTLLCAWSMTECARYLETIKVYEN 242

Query: 222 KSADSIREHMDNDYLSRLTHALTSIRHVNKTDVVTLGSSFGSLSQVMNASMEELARCPGI 281
           K AD I+  MD DYLSRL H+LTSIRHVNK+DVVTLGS+FGSL+ +++ASME+LARCPGI
Sbjct: 243 KPADLIQGQMDTDYLSRLNHSLTSIRHVNKSDVVTLGSTFGSLAHIIDASMEDLARCPGI 302

Query: 282 GERKVKRLHDTFHEPFKRV-SSRPNIVVPDTP----DREKASGQPSSTNDGAQDAVEKPD 336
           GERKVKRL+DTFHEPFKR  SS P++V P  P    +++  S +P   ++   +   K  
Sbjct: 303 GERKVKRLYDTFHEPFKRATSSYPSVVEPPIPEAPVEKDVNSEEPVEEDEDFVEDSRKRK 362

Query: 337 ASVNKKSSNVRSALTEAFAKYSEKI 361
               +    V++AL+  FA+YS+++
Sbjct: 363 KKEPEPEKTVKTALSAVFARYSDRL 387



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.131    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,197,585
Number of extensions: 275497
Number of successful extensions: 939
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 938
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 287
Effective length of database: 8,364,969
Effective search space: 2400746103
Effective search space used: 2400746103
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)