Os10g0516500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os10g0516500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 106.6 | 0.485 | 9.85 | -2.02 | 1.38 | 2.03 | 0.561 | 1.5 | -0.224 | 2.53 | 19.71 | 2558 | -- | -- |
| 108.71 | 0.486 | 9.88 | -2.4 | 1.39 | 2.04 | 0.869 | -- | -0.321 | 2.54 | 20.23 | 2598 | -- | -- |
| 107.69 | 0.483 | 9.84 | -2 | 1.38 | 2.02 | -- | 1.63 | -0.218 | 2.54 | 19.85 | 2558 | -- | -- |
| 109.55 | 0.487 | 9.89 | -2.39 | 1.36 | 2.04 | -- | -- | -0.306 | 2.56 | 20.97 | 2556 | -- | -- |
| 203.41 | 0.664 | 9.86 | -1.99 | -- | 2.46 | -- | 1.71 | -0.278 | -- | 19.96 | 1128 | -- | -- |
| 232.64 | 0.715 | 9.8 | -1.62 | 1.64 | -- | 0.862 | -- | 0.135 | 2.26 | -- | -- | -- | -- |
| 235.39 | 0.718 | 9.8 | -1.64 | 1.64 | -- | -- | -- | 0.129 | 2.28 | -- | -- | -- | -- |
| 203.52 | 0.664 | 9.9 | -2.35 | -- | 2.41 | -- | -- | -0.343 | -- | 22.21 | 1138 | -- | -- |
| 236.48 | 0.716 | 9.79 | -- | 1.37 | 1.38 | -- | -- | 0.178 | 2.4 | 24.76 | 1256 | -- | -- |
| 395.88 | 0.93 | 9.79 | -1.57 | -- | -- | -- | -- | 0.169 | -- | -- | -- | -- | -- |
| 306.6 | 0.819 | 9.76 | -- | 1.61 | -- | -- | -- | 0.312 | 2.26 | -- | -- | -- | -- |
| 335.84 | 0.854 | 9.8 | -- | -- | 1.86 | -- | -- | 0.126 | -- | 24 | 1144 | -- | -- |
| 461.27 | 1 | 9.75 | -- | -- | -- | -- | -- | 0.344 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 107.68 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 2 | 108.72 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 20 |
| 11 | 108.85 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 18 |
| 39 | 109.02 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 48 | 109.07 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 22 |
| 62 | 109.12 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 66 | 109.14 | temperature | 20 | 1440 | > th | dose dependent | rect. | 12 | 23 |
| 68 | 109.15 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 91 | 109.25 | temperature | 20 | 1440 | > th | dose dependent | rect. | 10 | 23 |
| 104 | 109.32 | temperature | 20 | 1440 | > th | dose dependent | sin | 4 | NA |
| 297 | 110.04 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 2 |
| 488 | 110.93 | temperature | 20 | 1440 | > th | dose dependent | sin | 18 | NA |
| 682 | 111.88 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 716 | 112.09 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 8 |
| 819 | 112.70 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 6 |
| 868 | 112.98 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 10 |
| 900 | 113.09 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 4 |