BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0516500 Os10g0516500|AK059055
         (244 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G76880.1  | chr1:28865594-28867931 FORWARD LENGTH=604           52   4e-07
AT1G33240.1  | chr1:12051859-12054320 REVERSE LENGTH=670           49   3e-06

>AT1G76880.1 | chr1:28865594-28867931 FORWARD LENGTH=604
          Length = 603

 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 20/22 (90%), Positives = 21/22 (95%)

Query: 1   KRPEDSKTCPYFHQLDALYRNK 22
           KRPEDSKTCPYFHQLDALYR +
Sbjct: 477 KRPEDSKTCPYFHQLDALYRER 498



>AT1G33240.1 | chr1:12051859-12054320 REVERSE LENGTH=670
          Length = 669

 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 18/22 (81%), Positives = 21/22 (95%)

Query: 1   KRPEDSKTCPYFHQLDALYRNK 22
           KRP+D+KTCPYFH+LD LYRNK
Sbjct: 504 KRPQDAKTCPYFHRLDLLYRNK 525



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.132    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,432,279
Number of extensions: 17468
Number of successful extensions: 25
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 2
Length of query: 244
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 148
Effective length of database: 8,474,633
Effective search space: 1254245684
Effective search space used: 1254245684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)