Os10g0516200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os10g0516200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 135.8 | 0.548 | 10.7 | -0.433 | 1.18 | -1.41 | 0.968 | -0.634 | -0.179 | 5.01 | 20.8 | 1225 | -- | -- |
| 136.67 | 0.544 | 10.7 | -0.303 | 1.18 | -1.33 | 0.911 | -- | -0.152 | 5.01 | 20.83 | 1212 | -- | -- |
| 138.02 | 0.547 | 10.7 | -0.392 | 1.18 | -1.44 | -- | -0.525 | -0.189 | 5 | 20.7 | 1232 | -- | -- |
| 138.65 | 0.548 | 10.7 | -0.293 | 1.19 | -1.38 | -- | -- | -0.161 | 4.99 | 20.68 | 1208 | -- | -- |
| 200.04 | 0.659 | 10.7 | -0.571 | -- | -1.15 | -- | -0.49 | -0.181 | -- | 21.24 | 470 | -- | -- |
| 182.78 | 0.634 | 10.7 | -0.862 | 1.13 | -- | 1.17 | -- | -0.48 | 5.32 | -- | -- | -- | -- |
| 186.17 | 0.639 | 10.7 | -0.86 | 1.13 | -- | -- | -- | -0.486 | 5.33 | -- | -- | -- | -- |
| 175.71 | 0.617 | 10.7 | -0.436 | -- | -1.05 | -- | -- | -0.178 | -- | 26.3 | 305 | -- | -- |
| 140.45 | 0.552 | 10.7 | -- | 1.21 | -1.51 | -- | -- | -0.114 | 4.98 | 20.6 | 1232 | -- | -- |
| 253.27 | 0.744 | 10.8 | -0.822 | -- | -- | -- | -- | -0.457 | -- | -- | -- | -- | -- |
| 205.68 | 0.671 | 10.7 | -- | 1.12 | -- | -- | -- | -0.39 | 5.36 | -- | -- | -- | -- |
| 182.2 | 0.629 | 10.7 | -- | -- | -1.12 | -- | -- | -0.0953 | -- | 26.4 | 309 | -- | -- |
| 271.08 | 0.768 | 10.7 | -- | -- | -- | -- | -- | -0.366 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 138.13 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 6 | 138.71 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 8 |
| 9 | 138.79 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 5 |
| 13 | 139.02 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 2 |
| 20 | 139.23 | temperature | 20 | 1440 | > th | dose independent | sin | 13 | NA |
| 29 | 139.37 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 16 |
| 53 | 139.74 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 18 |
| 57 | 139.78 | temperature | 20 | 1440 | < th | dose independent | sin | 13 | NA |
| 81 | 139.90 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 2 |
| 89 | 139.95 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 16 |
| 98 | 139.99 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 15 |
| 133 | 140.18 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 148 | 140.25 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 18 |
| 207 | 140.49 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 15 |
| 223 | 140.56 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 298 | 140.86 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 355 | 141.15 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 357 | 141.17 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 358 | 141.17 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 404 | 141.40 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 440 | 141.66 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 448 | 141.73 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 473 | 141.95 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 22 |
| 485 | 142.04 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 497 | 142.19 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 3 |
| 526 | 142.53 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 530 | 142.60 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 22 |
| 544 | 142.73 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 558 | 142.86 | wind | 5 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 586 | 143.18 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 620 | 143.49 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 625 | 143.64 | wind | 5 | 43200 | < th | dose dependent | rect. | 23 | 4 |
| 657 | 143.96 | wind | 3 | 43200 | < th | dose independent | rect. | 23 | 3 |
| 681 | 144.12 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 721 | 144.46 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 3 |
| 726 | 144.52 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 728 | 144.54 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 753 | 144.71 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 19 |
| 754 | 144.72 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 755 | 144.72 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 765 | 144.74 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 19 |
| 773 | 144.78 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 783 | 144.85 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 831 | 145.15 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 3 |
| 913 | 145.46 | wind | 3 | 43200 | < th | dose dependent | rect. | 22 | 6 |
| 931 | 145.52 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 993 | 145.72 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 1 |