Os10g0516000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os10g0516000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.35 | 0.263 | 9.82 | 0.269 | 0.163 | -1.24 | 0.846 | 0.876 | 0.254 | 6.93 | 21.3 | 15 | -- | -- |
| 31.97 | 0.265 | 9.84 | 0.118 | 0.159 | -1.21 | 0.878 | -- | 0.211 | 7.64 | 21.3 | 15 | -- | -- |
| 33.01 | 0.268 | 9.82 | 0.275 | 0.17 | -1.23 | -- | 0.827 | 0.252 | 5.99 | 21.36 | 14 | -- | -- |
| 33.44 | 0.269 | 9.85 | 0.119 | 0.205 | -1.12 | -- | -- | 0.193 | 5.33 | 21.37 | 7 | -- | -- |
| 33.82 | 0.271 | 9.83 | 0.336 | -- | -1.29 | -- | 1.11 | 0.261 | -- | 22.25 | 92 | -- | -- |
| 52.62 | 0.34 | 9.89 | -0.107 | 0.595 | -- | 0.262 | -- | 0.00769 | 3.52 | -- | -- | -- | -- |
| 52.81 | 0.34 | 9.89 | -0.111 | 0.594 | -- | -- | -- | 0.00628 | 3.39 | -- | -- | -- | -- |
| 34.71 | 0.274 | 9.85 | 0.145 | -- | -1.21 | -- | -- | 0.207 | -- | 21.68 | 99 | -- | -- |
| 33.79 | 0.271 | 9.85 | -- | 0.217 | -1.08 | -- | -- | 0.173 | 5.11 | 21.5 | 7 | -- | -- |
| 72.68 | 0.398 | 9.89 | -0.086 | -- | -- | -- | -- | 0.022 | -- | -- | -- | -- | -- |
| 53.13 | 0.341 | 9.89 | -- | 0.592 | -- | -- | -- | 0.0186 | 3.39 | -- | -- | -- | -- |
| 35.29 | 0.277 | 9.85 | -- | -- | -1.19 | -- | -- | 0.189 | -- | 21.84 | 92 | -- | -- |
| 72.87 | 0.398 | 9.89 | -- | -- | -- | -- | -- | 0.0315 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.40 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 2 | 27.44 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 11 | 28.55 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 110 | 31.62 | temperature | 30 | 90 | < th | dose dependent | rect. | 12 | 23 |
| 112 | 31.66 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 129 | 31.97 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 160 | 32.54 | temperature | 15 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 162 | 32.56 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 194 | 32.74 | temperature | 25 | 4320 | < th | dose dependent | rect. | 24 | 1 |
| 206 | 32.78 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 6 |
| 236 | 32.87 | temperature | 20 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 241 | 32.89 | temperature | 20 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 252 | 32.91 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 2 |
| 274 | 32.95 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 17 |
| 299 | 33.01 | temperature | 15 | 4320 | > th | dose dependent | sin | 11 | NA |
| 375 | 33.08 | temperature | 20 | 90 | > th | dose dependent | rect. | 18 | 23 |
| 386 | 33.09 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 432 | 33.15 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 497 | 33.20 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 550 | 33.25 | temperature | 20 | 10 | > th | dose dependent | rect. | 24 | 23 |
| 568 | 33.28 | temperature | 20 | 4320 | > th | dose independent | rect. | 23 | 7 |
| 571 | 33.28 | temperature | 30 | 4320 | < th | dose dependent | sin | 12 | NA |
| 591 | 33.29 | temperature | 20 | 4320 | < th | dose independent | rect. | 23 | 7 |
| 669 | 33.34 | temperature | 20 | 90 | > th | dose dependent | rect. | 24 | 23 |
| 736 | 33.40 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 786 | 33.44 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 10 |
| 916 | 33.55 | temperature | 20 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 959 | 33.58 | temperature | 20 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 999 | 33.60 | temperature | 20 | 90 | > th | dose dependent | rect. | 2 | 23 |