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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0508000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Monocopper oxidase-like protein SKS1 precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.3 (0.0448) R2 : 0.708
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.08 (0.123) R2dE : 0.708 R2E : 0.708
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.000879 (0.0943) R2dN8 : -1.96e-06 R2N8 : 1.65e-06
σ : 0.841
deviance : 325.93
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 5.516
memory length : 238
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 15.2
open length of G : 11.4

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
320.59 0.841 4.29 0.0799 0.563 3.62 -2.45 4.41 0.0321 22.6 8.935 245 15.2 11.3
325.07 0.84 4.32 -0.0589 0.581 3.56 -0.0448 -- -0.0501 22.5 8.251 213 15.5 11.4
328.48 0.844 4.35 0.476 2.04 2.55 -- 4.37 0.047 22.2 17.61 180 16 11.6
324.28 0.839 4.32 -0.104 0.633 3.52 -- -- -0.041 21.6 7.856 213 15.5 11.4
348.57 0.87 4.28 0.128 -- 4.14 -- 3.87 0.0803 -- 7.662 211 15.5 11.8
407.39 0.946 4.36 0.21 3.42 -- 0.825 -- 0.107 22.1 -- -- -- --
410.09 0.948 4.36 0.177 3.41 -- -- -- 0.105 22.2 -- -- -- --
326.9 0.842 4.32 -0.155 -- 4.23 -- -- -0.0863 -- 7.593 230 15.3 11.4
321.55 0.835 4.32 -- 0.835 3.39 -- -- -0.00247 20.5 7.268 194 15.8 11.8
1115.78 1.56 4.27 0.224 -- -- -- -- 0.111 -- -- -- -- --
410.91 0.948 4.37 -- 3.41 -- -- -- 0.0855 22.2 -- -- -- --
325.93 0.841 4.3 -- -- 4.08 -- -- 0.000879 -- 5.516 238 15.2 11.4
1117.1 1.56 4.28 -- -- -- -- -- 0.0863 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 323.84 temperature 10.0 270 > th dose dependent rect. 15 11
3 330.20 temperature 20.0 90 > th dose dependent rect. 17 12
15 337.22 temperature 10.0 270 > th dose dependent rect. 15 20
24 339.05 temperature 15.0 270 > th dose dependent rect. 16 3
34 340.17 temperature 25.0 270 > th dose independent rect. 16 3
36 340.22 temperature 20.0 90 > th dose dependent rect. 17 8
54 342.94 temperature 15.0 90 > th dose independent rect. 19 23
60 343.93 temperature 15.0 270 > th dose independent rect. 19 21
64 344.35 wind 9.0 720 < th dose independent rect. 7 12
68 344.52 temperature 25.0 270 > th dose independent rect. 15 5
87 345.74 wind 7.0 270 < th dose independent rect. 16 3
102 346.59 temperature 15.0 270 > th dose independent rect. 11 13
119 347.21 temperature 10.0 90 > th dose dependent rect. 18 1
120 347.22 temperature 25.0 90 > th dose independent rect. 18 1
130 347.59 precipitation 0.1 90 < th dose independent rect. 18 1
131 347.59 precipitation 0.1 90 < th dose dependent rect. 18 1
141 348.11 wind 1.0 90 > th dose independent rect. 18 1
142 348.13 temperature 15.0 10 > th dose independent rect. 20 22
149 348.40 wind 7.0 90 < th dose independent rect. 18 1
154 348.51 temperature 25.0 10 > th dose independent rect. 18 2
163 348.87 radiation 10.0 90 < th dose independent rect. 18 1
166 348.96 temperature 10.0 90 > th dose independent rect. 18 1
168 348.96 humidity 50.0 90 > th dose independent rect. 18 1
169 348.96 atmosphere 1010.0 90 < th dose independent rect. 18 1
178 349.12 radiation 40.0 90 < th dose dependent rect. 18 1
179 349.14 atmosphere 1015.0 90 < th dose dependent rect. 18 1
181 349.18 atmosphere 995.0 90 > th dose independent rect. 18 1
187 349.38 wind 9.0 90 < th dose dependent rect. 18 1
197 349.62 wind 9.0 720 < th dose independent rect. 7 21
201 349.76 temperature 15.0 270 > th dose independent rect. 19 11
205 349.89 temperature 15.0 10 > th dose dependent rect. 16 20
214 350.21 atmosphere 1015.0 270 < th dose independent rect. 24 11
215 350.21 radiation 20.0 270 < th dose dependent rect. 19 12
220 350.29 humidity 90.0 90 < th dose independent rect. 18 1
223 350.35 temperature 10.0 270 > th dose independent rect. 24 11
224 350.35 atmosphere 995.0 270 > th dose independent rect. 24 11
227 350.45 atmosphere 1015.0 270 < th dose independent rect. 14 21
235 350.60 radiation 1.0 270 > th dose independent rect. 16 3
252 350.90 wind 9.0 270 < th dose dependent rect. 16 3
254 350.91 humidity 90.0 270 < th dose independent rect. 16 3
255 350.93 wind 9.0 270 < th dose independent rect. 24 11
259 351.06 humidity 70.0 270 > th dose independent rect. 19 11
261 351.08 humidity 50.0 270 > th dose independent rect. 24 11
271 351.31 wind 1.0 270 > th dose independent rect. 16 3
272 351.35 precipitation 0.1 270 < th dose independent rect. 16 3
273 351.35 precipitation 0.1 270 < th dose dependent rect. 16 3
276 351.43 temperature 20.0 90 > th dose independent rect. 16 20
283 351.64 wind 1.0 90 > th dose dependent rect. 18 1
308 352.28 radiation 30.0 270 < th dose independent rect. 16 3
313 352.47 temperature 10.0 270 > th dose independent rect. 16 3
315 352.47 atmosphere 1010.0 270 < th dose independent rect. 16 3
319 352.50 radiation 10.0 270 < th dose independent rect. 19 11
320 352.53 temperature 20.0 90 > th dose independent rect. 17 12
322 352.55 wind 7.0 10 < th dose independent rect. 18 2
325 352.57 temperature 30.0 270 < th dose dependent rect. 12 16
332 352.75 precipitation 0.1 10 < th dose independent rect. 18 2
333 352.75 precipitation 0.1 10 < th dose dependent rect. 18 2
342 353.00 radiation 30.0 720 < th dose independent rect. 19 12
343 353.02 temperature 10.0 720 > th dose independent rect. 7 12
345 353.02 temperature 30.0 720 < th dose independent rect. 19 12
346 353.02 humidity 50.0 720 > th dose independent rect. 19 12
347 353.02 atmosphere 995.0 720 > th dose independent rect. 19 12
348 353.02 atmosphere 1015.0 720 < th dose independent rect. 7 12
362 353.23 wind 9.0 720 < th dose independent rect. 19 12
368 353.27 precipitation 0.1 10 < th dose independent rect. 20 22
369 353.27 precipitation 0.1 10 < th dose dependent rect. 20 22
370 353.28 wind 9.0 720 < th dose independent rect. 23 20
371 353.29 wind 1.0 10 > th dose independent rect. 18 2
373 353.42 humidity 50.0 270 > th dose independent rect. 11 13
383 353.62 wind 9.0 90 < th dose independent rect. 19 23
384 353.63 radiation 20.0 10 < th dose dependent rect. 18 2
387 353.64 precipitation 0.1 270 < th dose independent rect. 19 21
389 353.64 precipitation 0.1 270 < th dose dependent rect. 19 21
395 353.70 precipitation 0.1 270 < th dose independent rect. 24 11
397 353.70 precipitation 0.1 270 < th dose dependent rect. 24 11
398 353.71 temperature 10.0 10 > th dose independent rect. 18 2
400 353.71 humidity 50.0 10 > th dose independent rect. 18 2
401 353.71 atmosphere 1010.0 10 < th dose independent rect. 18 2
403 353.71 radiation 20.0 10 < th dose independent rect. 18 2
427 353.92 precipitation 0.1 270 < th dose independent rect. 6 13
428 353.92 precipitation 0.1 270 < th dose dependent rect. 6 13
429 353.93 atmosphere 995.0 10 > th dose independent rect. 18 2
458 354.44 temperature 20.0 270 > th dose dependent sin 14 NA
462 354.48 precipitation 0.1 90 < th dose independent rect. 19 23
465 354.48 precipitation 0.1 90 < th dose dependent rect. 19 23
482 354.70 atmosphere 995.0 90 > th dose dependent rect. 18 1
494 354.91 wind 9.0 270 < th dose independent rect. 19 21
512 355.04 radiation 1.0 270 > th dose dependent rect. 16 2
514 355.06 precipitation 0.1 270 < th dose independent rect. 11 13
515 355.06 precipitation 0.1 270 < th dose dependent rect. 11 13
541 355.26 wind 9.0 10 < th dose independent rect. 20 22
550 355.33 atmosphere 995.0 270 > th dose independent rect. 19 21
552 355.33 atmosphere 1015.0 270 < th dose dependent rect. 16 3
596 355.73 humidity 90.0 10 < th dose independent rect. 18 2
611 355.88 temperature 20.0 10 > th dose independent rect. 18 18
621 355.98 atmosphere 1015.0 90 < th dose independent rect. 17 12
625 356.10 temperature 30.0 90 < th dose dependent rect. 20 11
626 356.13 atmosphere 1015.0 10 < th dose dependent rect. 18 2
628 356.21 precipitation 0.1 270 < th dose independent rect. 19 11
629 356.21 precipitation 0.1 270 < th dose dependent rect. 19 11
684 356.66 temperature 30.0 270 < th dose dependent sin 15 NA
727 357.24 wind 9.0 10 < th dose dependent rect. 18 2
739 357.36 atmosphere 995.0 270 > th dose independent rect. 16 3
762 357.67 temperature 15.0 720 > th dose independent rect. 19 4
772 357.77 atmosphere 1015.0 10 < th dose independent rect. 16 20
782 357.92 wind 7.0 720 < th dose independent rect. 4 3
790 358.03 humidity 50.0 270 > th dose independent rect. 19 21
791 358.05 humidity 70.0 720 > th dose independent rect. 4 3
792 358.08 temperature 30.0 90 < th dose dependent sin 12 NA
798 358.14 precipitation 0.1 720 < th dose independent rect. 4 3
799 358.14 precipitation 0.1 720 < th dose dependent rect. 4 3
812 358.24 wind 9.0 270 < th dose independent rect. 14 21
820 358.30 radiation 30.0 720 < th dose independent rect. 4 3
826 358.34 temperature 10.0 720 > th dose independent rect. 4 3
827 358.34 temperature 30.0 720 < th dose independent rect. 4 3
828 358.34 humidity 50.0 720 > th dose independent rect. 4 3
830 358.34 atmosphere 995.0 720 > th dose independent rect. 4 3
831 358.34 atmosphere 1015.0 720 < th dose independent rect. 4 3
833 358.34 temperature 10.0 720 > th dose independent rect. 7 21
887 358.79 atmosphere 995.0 10 > th dose independent rect. 20 22
904 358.99 humidity 90.0 90 < th dose dependent rect. 18 1
937 359.32 atmosphere 995.0 10 > th dose dependent rect. 18 2
944 359.40 atmosphere 995.0 270 > th dose independent rect. 11 13
975 359.68 radiation 40.0 720 < th dose dependent rect. 4 3
983 359.77 wind 9.0 270 < th dose independent rect. 11 13
991 359.87 wind 7.0 720 < th dose independent rect. 7 4