BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0508000 Os10g0508000|J023110C09
         (79 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G12420.1  | chr4:7349941-7352868 REVERSE LENGTH=588             82   6e-17
AT5G51480.1  | chr5:20910433-20913153 FORWARD LENGTH=593           80   2e-16
AT4G25240.1  | chr4:12930539-12933563 FORWARD LENGTH=590           74   2e-14

>AT4G12420.1 | chr4:7349941-7352868 REVERSE LENGTH=588
          Length = 587

 Score = 81.6 bits (200), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 38/47 (80%), Positives = 41/47 (87%)

Query: 10  LRKMLDSGKDLGMPDGVLINGKGPYRYNDSLVPAGIEYETINVDPGK 56
           LRK LD GKDLGMPDGVLINGKGPYRYND+LV  GI++ETI V PGK
Sbjct: 173 LRKALDDGKDLGMPDGVLINGKGPYRYNDTLVADGIDFETITVHPGK 219



>AT5G51480.1 | chr5:20910433-20913153 FORWARD LENGTH=593
          Length = 592

 Score = 80.1 bits (196), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 37/47 (78%), Positives = 44/47 (93%), Gaps = 1/47 (2%)

Query: 10  LRKMLDSGKDLGMPDGVLINGKGPYRYNDSLVPAGIEYETINVDPGK 56
           LR++LDSGK+LGMPDGVLINGKGP++YN S VP GIE+ET+NVDPGK
Sbjct: 176 LRRILDSGKELGMPDGVLINGKGPFKYNSS-VPDGIEHETVNVDPGK 221



>AT4G25240.1 | chr4:12930539-12933563 FORWARD LENGTH=590
          Length = 589

 Score = 73.6 bits (179), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/47 (74%), Positives = 41/47 (87%), Gaps = 1/47 (2%)

Query: 10  LRKMLDSGKDLGMPDGVLINGKGPYRYNDSLVPAGIEYETINVDPGK 56
           LR+ LDSGK+LGMPDGVLINGKGPY+YN S VP GI+Y T +V+PGK
Sbjct: 177 LRRALDSGKELGMPDGVLINGKGPYKYNSS-VPDGIDYLTFHVEPGK 222



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.143    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,879,270
Number of extensions: 71023
Number of successful extensions: 144
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 3
Length of query: 79
Length of database: 11,106,569
Length adjustment: 51
Effective length of query: 28
Effective length of database: 9,708,353
Effective search space: 271833884
Effective search space used: 271833884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)