Os10g0507500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os10g0507500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.03 | 0.294 | 9.79 | -0.453 | 0.146 | -0.455 | -0.834 | -0.321 | -0.0326 | 5.65 | 79 | 818 | -- | -- |
| 39.17 | 0.291 | 9.79 | -0.432 | 0.117 | -0.479 | -0.794 | -- | -0.0277 | 5.09 | 79.1 | 801 | -- | -- |
| 40.24 | 0.295 | 9.79 | -0.462 | 0.187 | -0.377 | -- | -0.0703 | -0.0573 | 7.75 | 78.98 | 800 | -- | -- |
| 40.18 | 0.295 | 9.78 | -0.432 | 0.183 | -0.374 | -- | -- | -0.0355 | 7.74 | 78.85 | 782 | -- | -- |
| 40.96 | 0.298 | 9.79 | -0.412 | -- | -0.511 | -- | 0.0513 | -0.0341 | -- | 78.68 | 751 | -- | -- |
| 42.68 | 0.306 | 9.78 | -0.448 | 0.385 | -- | -0.269 | -- | -0.0445 | 7.96 | -- | -- | -- | -- |
| 42.85 | 0.307 | 9.78 | -0.455 | 0.384 | -- | -- | -- | -0.0436 | 8.22 | -- | -- | -- | -- |
| 40.96 | 0.298 | 9.79 | -0.416 | -- | -0.512 | -- | -- | -0.0342 | -- | 78.6 | 755 | -- | -- |
| 44.97 | 0.312 | 9.77 | -- | 0.152 | -0.41 | -- | -- | 0.0111 | 7.74 | 79 | 781 | -- | -- |
| 50.99 | 0.334 | 9.79 | -0.452 | -- | -- | -- | -- | -0.0392 | -- | -- | -- | -- | -- |
| 48.3 | 0.325 | 9.77 | -- | 0.382 | -- | -- | -- | 0.00702 | 8.3 | -- | -- | -- | -- |
| 44.87 | 0.312 | 9.78 | -- | -- | -0.579 | -- | -- | 0.0242 | -- | 75.52 | 773 | -- | -- |
| 56.37 | 0.35 | 9.78 | -- | -- | -- | -- | -- | 0.0109 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.29 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 10 |
| 2 | 37.34 | temperature | 25 | 90 | < th | dose independent | rect. | 24 | 19 |
| 4 | 37.40 | temperature | 25 | 90 | > th | dose independent | rect. | 1 | 15 |
| 11 | 37.56 | humidity | 60 | 720 | > th | dose independent | rect. | 17 | 16 |
| 12 | 37.56 | temperature | 25 | 90 | < th | dose independent | rect. | 24 | 21 |
| 19 | 37.68 | temperature | 25 | 90 | < th | dose independent | rect. | 24 | 11 |
| 23 | 37.70 | temperature | 25 | 10 | > th | dose dependent | rect. | 1 | 15 |
| 25 | 37.71 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 13 |
| 27 | 37.72 | temperature | 25 | 270 | < th | dose independent | rect. | 24 | 14 |
| 37 | 37.78 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 3 |
| 63 | 37.88 | temperature | 10 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 67 | 37.89 | radiation | 40 | 720 | < th | dose independent | rect. | 12 | 21 |
| 76 | 37.92 | humidity | 60 | 720 | > th | dose independent | rect. | 17 | 7 |
| 80 | 37.94 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 107 | 38.02 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 7 |
| 126 | 38.13 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 21 |
| 130 | 38.18 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 6 |
| 144 | 38.20 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 149 | 38.21 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 154 | 38.22 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 1 |
| 186 | 38.27 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 13 | 8 |
| 215 | 38.35 | temperature | 25 | 90 | > th | dose independent | sin | 4 | NA |
| 216 | 38.35 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 16 |
| 227 | 38.38 | humidity | 60 | 720 | < th | dose independent | rect. | 18 | 1 |
| 242 | 38.38 | humidity | 60 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 268 | 38.40 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 13 | 8 |
| 279 | 38.43 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 18 |
| 284 | 38.43 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 13 | 10 |
| 293 | 38.45 | humidity | 80 | 720 | > th | dose independent | rect. | 20 | 19 |
| 295 | 38.45 | temperature | 25 | 10 | > th | dose dependent | sin | 2 | NA |
| 305 | 38.46 | temperature | 30 | 720 | < th | dose independent | rect. | 18 | 14 |
| 316 | 38.48 | humidity | 70 | 720 | > th | dose independent | sin | 12 | NA |
| 321 | 38.49 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 1 |
| 362 | 38.54 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 9 |
| 439 | 38.62 | humidity | 80 | 720 | < th | dose independent | rect. | 9 | 14 |
| 467 | 38.65 | humidity | 90 | 270 | > th | dose independent | rect. | 1 | 2 |
| 469 | 38.65 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 14 | 7 |
| 523 | 38.71 | temperature | 25 | 90 | < th | dose independent | sin | 5 | NA |
| 543 | 38.74 | atmosphere | 1010 | 90 | < th | dose independent | rect. | 16 | 14 |
| 557 | 38.75 | temperature | 30 | 90 | > th | dose independent | rect. | 9 | 7 |
| 567 | 38.76 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 3 |
| 582 | 38.78 | wind | 1 | 720 | > th | dose independent | rect. | 5 | 16 |
| 594 | 38.80 | wind | 1 | 720 | > th | dose independent | rect. | 5 | 7 |
| 647 | 38.83 | humidity | 80 | 720 | < th | dose dependent | sin | 12 | NA |
| 654 | 38.83 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 21 |
| 660 | 38.84 | humidity | 90 | 90 | > th | dose dependent | rect. | 3 | 2 |
| 672 | 38.85 | atmosphere | 1010 | 10 | < th | dose independent | rect. | 16 | 14 |
| 681 | 38.85 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 718 | 38.88 | humidity | 90 | 270 | > th | dose dependent | rect. | 1 | 3 |
| 763 | 38.91 | humidity | 80 | 720 | > th | dose independent | rect. | 21 | 1 |
| 778 | 38.92 | humidity | 90 | 10 | < th | dose independent | rect. | 4 | 12 |
| 779 | 38.92 | radiation | 40 | 720 | < th | dose independent | rect. | 12 | 12 |
| 795 | 38.93 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 814 | 38.95 | radiation | 10 | 720 | < th | dose independent | rect. | 15 | 9 |
| 841 | 38.96 | humidity | 70 | 720 | > th | dose independent | rect. | 19 | 12 |
| 862 | 38.97 | radiation | 40 | 720 | < th | dose independent | rect. | 13 | 1 |
| 871 | 38.97 | wind | 9 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 872 | 38.97 | humidity | 90 | 90 | > th | dose dependent | rect. | 1 | 6 |
| 878 | 38.98 | humidity | 70 | 720 | < th | dose independent | sin | 12 | NA |
| 884 | 38.99 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 906 | 39.00 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 9 |
| 919 | 39.00 | radiation | 10 | 720 | < th | dose dependent | rect. | 15 | 9 |
| 928 | 39.01 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 11 | 9 |
| 929 | 39.01 | humidity | 80 | 720 | > th | dose independent | rect. | 4 | 11 |
| 945 | 39.01 | humidity | 70 | 720 | > th | dose dependent | rect. | 4 | 13 |
| 958 | 39.02 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 16 | 14 |
| 962 | 39.02 | radiation | 40 | 720 | < th | dose independent | rect. | 21 | 19 |
| 966 | 39.02 | wind | 3 | 90 | < th | dose dependent | rect. | 3 | 2 |
| 971 | 39.02 | wind | 1 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 979 | 39.03 | wind | 1 | 720 | > th | dose independent | rect. | 8 | 11 |
| 983 | 39.03 | humidity | 60 | 720 | < th | dose independent | rect. | 17 | 17 |
| 984 | 39.03 | humidity | 70 | 720 | < th | dose independent | rect. | 14 | 18 |