BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0507500 Os10g0507500|Os10g0507500
         (248 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G16530.1  | chr4:9311355-9315554 FORWARD LENGTH=804             57   9e-09

>AT4G16530.1 | chr4:9311355-9315554 FORWARD LENGTH=804
          Length = 803

 Score = 57.0 bits (136), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 22/22 (100%), Positives = 22/22 (100%)

Query: 1   MGGHGGLNILPQKRWNVYNFDN 22
           MGGHGGLNILPQKRWNVYNFDN
Sbjct: 552 MGGHGGLNILPQKRWNVYNFDN 573




 Score = 52.4 bits (124), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/25 (80%), Positives = 22/25 (88%)

Query: 155 PDEEKYRLGYGLAGKGVAAPWYMSK 179
           PDEEKYRLGYG+AGKGV  PWY+ K
Sbjct: 710 PDEEKYRLGYGVAGKGVKRPWYLEK 734



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.312    0.132    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,079,408
Number of extensions: 66019
Number of successful extensions: 123
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 2
Length of query: 248
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 152
Effective length of database: 8,474,633
Effective search space: 1288144216
Effective search space used: 1288144216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 110 (47.0 bits)