Os10g0503500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NAD-dependent malic enzyme 59 kDa isoform, mitochondrial precursor (EC 1.1.1.39) (NAD-ME).
FiT-DB / Search/ Help/ Sample detail
|
Os10g0503500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to NAD-dependent malic enzyme 59 kDa isoform, mitochondrial precursor (EC 1.1.1.39) (NAD-ME).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.42 | 0.272 | 11.9 | -1.11 | 0.693 | -0.533 | -0.528 | -0.871 | 0.124 | 11 | 24.2 | 16 | -- | -- |
| 33.74 | 0.271 | 11.9 | -1 | 0.706 | -0.626 | -0.622 | -- | 0.152 | 11.1 | 24.45 | 18 | -- | -- |
| 34.37 | 0.275 | 11.9 | -1.21 | 0.694 | -0.475 | -- | -1.45 | 0.0985 | 10.8 | 24.1 | 12 | -- | -- |
| 35.44 | 0.277 | 11.9 | -1.02 | 0.706 | -0.618 | -- | -- | 0.15 | 11 | 24.5 | 16 | -- | -- |
| 55.15 | 0.346 | 11.9 | -1.21 | -- | -0.444 | -- | -1.58 | 0.102 | -- | 24.4 | 608 | -- | -- |
| 40.05 | 0.297 | 11.9 | -1.1 | 0.614 | -- | -0.583 | -- | 0.0868 | 9.86 | -- | -- | -- | -- |
| 41.27 | 0.301 | 11.9 | -1.12 | 0.621 | -- | -- | -- | 0.0846 | 9.61 | -- | -- | -- | -- |
| 54.58 | 0.344 | 11.9 | -1.01 | -- | -0.577 | -- | -- | 0.145 | -- | 24.2 | 628 | -- | -- |
| 61.67 | 0.366 | 11.8 | -- | 0.759 | -0.861 | -- | -- | 0.321 | 11.5 | 22.88 | 46 | -- | -- |
| 64.11 | 0.374 | 11.9 | -1.13 | -- | -- | -- | -- | 0.0859 | -- | -- | -- | -- | -- |
| 74.39 | 0.403 | 11.9 | -- | 0.624 | -- | -- | -- | 0.209 | 9.74 | -- | -- | -- | -- |
| 75.61 | 0.405 | 11.8 | -- | -- | -1.12 | -- | -- | 0.35 | -- | 14.62 | 714 | -- | -- |
| 97.55 | 0.461 | 11.9 | -- | -- | -- | -- | -- | 0.211 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.12 | temperature | 30 | 270 | < th | dose independent | rect. | 11 | 19 |
| 2 | 31.12 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 13 | 31.73 | temperature | 30 | 270 | < th | dose independent | rect. | 24 | 17 |
| 34 | 31.97 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 70 | 32.21 | temperature | 30 | 270 | < th | dose independent | rect. | 22 | 21 |
| 108 | 32.43 | temperature | 15 | 720 | > th | dose dependent | rect. | 5 | 6 |
| 122 | 32.50 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 154 | 32.65 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 193 | 32.79 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 221 | 32.89 | temperature | 25 | 30 | > th | dose dependent | rect. | 17 | 21 |
| 222 | 32.90 | humidity | 60 | 270 | > th | dose independent | rect. | 11 | 19 |
| 225 | 32.91 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 5 |
| 245 | 32.97 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 19 |
| 280 | 33.07 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 7 |
| 316 | 33.16 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 470 | 33.45 | temperature | 30 | 270 | < th | dose independent | rect. | 11 | 6 |
| 494 | 33.47 | temperature | 30 | 720 | < th | dose independent | rect. | 20 | 17 |
| 497 | 33.47 | temperature | 10 | 10 | > th | dose dependent | sin | 23 | NA |
| 540 | 33.52 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 1 |
| 545 | 33.52 | temperature | 20 | 720 | > th | dose dependent | sin | 4 | NA |
| 632 | 33.59 | temperature | 30 | 720 | < th | dose independent | rect. | 4 | 9 |
| 671 | 33.61 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 673 | 33.62 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 768 | 33.71 | temperature | 25 | 720 | > th | dose independent | sin | 3 | NA |
| 919 | 33.84 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 6 |
| 952 | 33.87 | temperature | 25 | 90 | > th | dose independent | rect. | 7 | 4 |
| 953 | 33.87 | temperature | 30 | 270 | > th | dose independent | rect. | 16 | 22 |
| 969 | 33.88 | wind | 5 | 720 | < th | dose independent | rect. | 7 | 6 |