Os10g0502400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Glutamyl-tRNA reductase 2 (EC 1.2.1.70) (GluTR) (Fragment).
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Os10g0502400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Glutamyl-tRNA reductase 2 (EC 1.2.1.70) (GluTR) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.21 | 0.385 | 14.4 | -2.19 | 0.931 | -0.606 | -0.128 | -0.296 | -1.31 | 7.56 | 40.39 | 10 | -- | -- |
| 67.46 | 0.383 | 14.4 | -2.18 | 0.93 | -0.598 | 0.0221 | -- | -1.31 | 7.53 | 38.05 | 9 | -- | -- |
| 67.25 | 0.382 | 14.4 | -2.19 | 0.93 | -0.605 | -- | -0.248 | -1.31 | 7.55 | 39.9 | 9 | -- | -- |
| 67.46 | 0.383 | 14.4 | -2.18 | 0.925 | -0.606 | -- | -- | -1.31 | 7.5 | 38.15 | 9 | -- | -- |
| 101.58 | 0.472 | 14.4 | -2.15 | -- | -0.711 | -- | -0.166 | -1.31 | -- | 7.515 | 5 | -- | -- |
| 74.03 | 0.403 | 14.4 | -2.17 | 1.17 | -- | 0.11 | -- | -1.31 | 8.97 | -- | -- | -- | -- |
| 74.08 | 0.403 | 14.4 | -2.16 | 1.17 | -- | -- | -- | -1.31 | 8.97 | -- | -- | -- | -- |
| 100.86 | 0.468 | 14.4 | -2.15 | -- | -0.724 | -- | -- | -1.31 | -- | 7.269 | 2 | -- | -- |
| 191.81 | 0.645 | 14.3 | -- | 0.958 | -0.64 | -- | -- | -1.06 | 8.09 | 72.16 | 7 | -- | -- |
| 153.04 | 0.578 | 14.4 | -2.16 | -- | -- | -- | -- | -1.3 | -- | -- | -- | -- | -- |
| 197.24 | 0.657 | 14.3 | -- | 1.17 | -- | -- | -- | -1.07 | 9.11 | -- | -- | -- | -- |
| 220.43 | 0.691 | 14.4 | -- | -- | -0.763 | -- | -- | -1.06 | -- | 10 | 3 | -- | -- |
| 276.43 | 0.776 | 14.4 | -- | -- | -- | -- | -- | -1.06 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.03 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 4 | 62.57 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 5 | 62.61 | wind | 1.0 | 43200 | > th | dose independent | rect. | 3 | 5 |
| 7 | 63.04 | wind | 1.0 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 8 | 63.07 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 16 | 63.42 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 17 | 63.48 | wind | 1.0 | 14400 | < th | dose independent | rect. | 3 | 2 |
| 18 | 63.54 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 1 | 18 |
| 20 | 63.57 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 23 | 20 |
| 21 | 63.59 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 1 | 19 |
| 35 | 63.98 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 124 | 65.16 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 194 | 65.75 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 1 | 18 |
| 195 | 65.75 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 19 |
| 206 | 65.83 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 13 | 6 |
| 225 | 65.95 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 228 | 65.96 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 13 | 19 |
| 231 | 65.98 | wind | 3.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 236 | 66.00 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 241 | 66.02 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 244 | 66.03 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 249 | 66.07 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 14 | 4 |
| 276 | 66.21 | radiation | 30.0 | 10 | < th | dose independent | rect. | 1 | 19 |
| 285 | 66.28 | wind | 1.0 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 292 | 66.31 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 1 | 10 |
| 325 | 66.46 | wind | 1.0 | 43200 | < th | dose independent | sin | 8 | NA |
| 338 | 66.51 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 1 | 19 |
| 347 | 66.53 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 353 | 66.55 | wind | 3.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 355 | 66.56 | wind | 1.0 | 43200 | > th | dose independent | sin | 8 | NA |
| 357 | 66.57 | radiation | 30.0 | 270 | < th | dose independent | rect. | 23 | 19 |
| 373 | 66.63 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 382 | 66.65 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 3 |
| 390 | 66.67 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 15 | 20 |
| 410 | 66.73 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 414 | 66.75 | radiation | 30.0 | 90 | < th | dose independent | rect. | 1 | 18 |
| 416 | 66.76 | wind | 1.0 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 436 | 66.82 | atmosphere | 1005.0 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 443 | 66.83 | atmosphere | 1005.0 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 453 | 66.84 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 1 | 18 |
| 454 | 66.85 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 456 | 66.85 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 474 | 66.89 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 4 |
| 478 | 66.90 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 18 | 20 |
| 482 | 66.90 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 18 | 20 |
| 483 | 66.91 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 12 | 4 |
| 485 | 66.91 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 19 | 2 |
| 487 | 66.91 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 12 | 4 |
| 512 | 66.98 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 9 |
| 516 | 66.99 | wind | 9.0 | 4320 | < th | dose independent | rect. | 17 | 16 |
| 533 | 67.03 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 4 |
| 535 | 67.03 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 4 |
| 543 | 67.04 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 7 |
| 549 | 67.05 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 550 | 67.06 | wind | 9.0 | 4320 | > th | dose independent | rect. | 17 | 15 |
| 553 | 67.06 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 14 | 4 |
| 556 | 67.06 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 23 | 19 |
| 560 | 67.08 | temperature | 20.0 | 270 | > th | dose independent | rect. | 14 | 4 |
| 563 | 67.08 | atmosphere | 1010.0 | 1440 | < th | dose dependent | rect. | 22 | 14 |
| 564 | 67.09 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 566 | 67.09 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 23 | 9 |
| 568 | 67.09 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 572 | 67.10 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 574 | 67.11 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 580 | 67.11 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 582 | 67.11 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 7 |
| 583 | 67.11 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 1 | 13 |
| 585 | 67.12 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 12 | 4 |
| 588 | 67.13 | atmosphere | 1005.0 | 4320 | < th | dose independent | rect. | 22 | 10 |
| 596 | 67.13 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 603 | 67.14 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 10 | 10 |
| 616 | 67.16 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 618 | 67.16 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 624 | 67.16 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 632 | 67.17 | atmosphere | 1005.0 | 4320 | > th | dose independent | rect. | 23 | 10 |
| 664 | 67.19 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 17 | 15 |
| 670 | 67.20 | wind | 5.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 688 | 67.21 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 12 |
| 702 | 67.23 | atmosphere | 1010.0 | 1440 | < th | dose dependent | sin | 7 | NA |
| 708 | 67.23 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 22 | 21 |
| 710 | 67.24 | wind | 5.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 711 | 67.24 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 713 | 67.24 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 15 | 17 |
| 714 | 67.24 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 715 | 67.24 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 13 | 6 |
| 719 | 67.25 | wind | 1.0 | 1440 | < th | dose independent | rect. | 19 | 2 |
| 726 | 67.25 | radiation | 40.0 | 10 | < th | dose dependent | sin | 23 | NA |
| 738 | 67.27 | atmosphere | 1005.0 | 4320 | < th | dose independent | rect. | 22 | 6 |
| 742 | 67.27 | temperature | 20.0 | 10 | > th | dose independent | rect. | 16 | 16 |
| 745 | 67.27 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 9 | 22 |
| 750 | 67.27 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 7 | 13 |
| 751 | 67.27 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 16 | 16 |
| 778 | 67.29 | radiation | 10.0 | 10 | < th | dose dependent | sin | 23 | NA |
| 782 | 67.30 | atmosphere | 1005.0 | 4320 | < th | dose independent | rect. | 23 | 2 |
| 832 | 67.33 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 12 | 4 |
| 836 | 67.33 | atmosphere | 995.0 | 1440 | > th | dose dependent | rect. | 23 | 13 |
| 860 | 67.35 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 7 |
| 862 | 67.35 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 13 | 23 |
| 863 | 67.35 | radiation | 40.0 | 10 | < th | dose dependent | no | NA | NA |
| 864 | 67.35 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 7 |
| 890 | 67.37 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 892 | 67.37 | radiation | 40.0 | 270 | < th | dose independent | rect. | 14 | 4 |
| 894 | 67.37 | radiation | 30.0 | 270 | < th | dose independent | rect. | 11 | 7 |
| 899 | 67.37 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 18 | 2 |
| 944 | 67.39 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 951 | 67.40 | wind | 1.0 | 43200 | < th | dose dependent | sin | 6 | NA |
| 985 | 67.41 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 14 | 18 |
| 987 | 67.41 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 995 | 67.42 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 999 | 67.42 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 15 | 23 |