BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0502400 Os10g0502400|AK099393
(537 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G58290.1 | chr1:21624028-21626051 REVERSE LENGTH=544 646 0.0
AT1G09940.1 | chr1:3237224-3239262 REVERSE LENGTH=531 614 e-176
AT2G31250.1 | chr2:13319702-13321526 REVERSE LENGTH=525 487 e-138
>AT1G58290.1 | chr1:21624028-21626051 REVERSE LENGTH=544
Length = 543
Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/449 (70%), Positives = 362/449 (80%), Gaps = 2/449 (0%)
Query: 71 LEQFKISA-DRYMKERSSIAVIGLSVHTAPVEMREKLAVAEELWPRAISELTSLNHIEEA 129
LEQ K SA DRY KERSSI VIGLS+HTAPVEMREKLA+ E WPRAI+EL LNHIEEA
Sbjct: 79 LEQLKNSAADRYTKERSSIVVIGLSIHTAPVEMREKLAIPEAEWPRAIAELCGLNHIEEA 138
Query: 130 AVLSTCNRMEIYVVALSWNRGIREVVDWMSKKSGIPASELREHLFMLRDSDATRHLFEVS 189
AVLSTCNRMEIYV+ALS +RG++EV +WMSK SGIP SE+ +H F+L + DAT+H+FEVS
Sbjct: 139 AVLSTCNRMEIYVLALSQHRGVKEVTEWMSKTSGIPVSEICQHRFLLYNKDATQHIFEVS 198
Query: 190 AGLDSLVLGEGQILAQVKQVVRSGQNSGGLGKNIDRMFKDAITAGKRVRCETNIXXXXXX 249
AGLDSLVLGEGQILAQVKQVV+ GQ G G+NI +FK AIT GKRVR ETNI
Sbjct: 199 AGLDSLVLGEGQILAQVKQVVKVGQGVNGFGRNISGLFKHAITVGKRVRTETNIASGAVS 258
Query: 250 XXXXXXELALMKLPKSECLSARMLLIGAGKMGKLVVKHLIAKGCKKXXXXXXXXXXXDAI 309
ELALMKLP+S +SARM +IGAGKMGKLV+KHL+AKGC K AI
Sbjct: 259 VSSAAVELALMKLPQSSNVSARMCVIGAGKMGKLVIKHLMAKGCTKVVVVNRSEERVSAI 318
Query: 310 REEMKDIEIVYRPLTEMYEAAAEADVVFTSTASETPLFTKEHAEALPAISDAMGGVRLFV 369
REEM IEI+YRPL EM A+EADVVFTSTASETPLF KEH E LP S +GG+R FV
Sbjct: 319 REEMPGIEIIYRPLDEMLACASEADVVFTSTASETPLFLKEHVENLPQASPEVGGLRHFV 378
Query: 370 DISVPRNVSACVSEVGHARVYNVDDLKEVVEANKEDRLRKAMEAQTIITQELKRFEAWRD 429
DISVPRNV +CV EV ARVYNVDDLKEVV ANKEDR+RKAMEAQTIIT+E +FEAWRD
Sbjct: 379 DISVPRNVGSCVGEVETARVYNVDDLKEVVAANKEDRMRKAMEAQTIITEESTQFEAWRD 438
Query: 430 SLETVPTIKKLRSYADRIRASELEKCLQKIGEDALTKKMRRSIEELSTGIVNKLLHGPLQ 489
SLETVPTIKKLR+YA+RIR +ELEKC+ K+G+D + KK R++++LS GIVN+ LHGP+Q
Sbjct: 439 SLETVPTIKKLRAYAERIRVAELEKCMSKMGDD-INKKTTRAVDDLSRGIVNRFLHGPMQ 497
Query: 490 HLRCDGSDSRTLDETLENMHALNRMFSLD 518
HLRCDGSDSRTL ETLENMHALNRM+ L+
Sbjct: 498 HLRCDGSDSRTLSETLENMHALNRMYGLE 526
>AT1G09940.1 | chr1:3237224-3239262 REVERSE LENGTH=531
Length = 530
Score = 614 bits (1583), Expect = e-176, Method: Compositional matrix adjust.
Identities = 306/451 (67%), Positives = 353/451 (78%), Gaps = 8/451 (1%)
Query: 71 LEQFKISA-DRYMKERSSIAVIGLSVHTAPVEMREKLAVAEELWPRAISELTSLNHIEEA 129
LEQ K SA DRY KERSSI VIGLS+HTAPVEMREKLA+ E WPRAI+EL LNHIEEA
Sbjct: 70 LEQLKTSAIDRYTKERSSIVVIGLSIHTAPVEMREKLAIPEAEWPRAIAELCGLNHIEEA 129
Query: 130 AVLSTCNRMEIYVVALSWNRGIREVVDWMSKKSGIPASELREHLFMLRDSDATRHLFEVS 189
AVLSTCNRMEIYV+ALS +RG++EV +WMSK SGIP SE+ +H F+L + D T+H+FEVS
Sbjct: 130 AVLSTCNRMEIYVLALSQHRGVKEVTEWMSKTSGIPVSEICQHRFLLYNKDVTQHIFEVS 189
Query: 190 AGLDSLVLGEGQILAQVKQVVRSGQNSGGLGKNIDRMFKDAITAGKRVRCETNIXXXXXX 249
AGLDSLVLGEGQILAQVKQVV+ GQ G G+NI +FK AIT GKRVR ETNI
Sbjct: 190 AGLDSLVLGEGQILAQVKQVVKVGQGVNGFGRNISGLFKHAITVGKRVRTETNIAAGAVS 249
Query: 250 XXXXXXELALMKLPK-SECLSARMLLIGAGKMGKLVVKHLIAKGCKKXXXXXXXXXXXDA 308
ELALMKLP+ S SARML++GAGKMGKLV+KHL+AKGC K A
Sbjct: 250 VSSAAVELALMKLPESSHASSARMLVVGAGKMGKLVIKHLVAKGCTKMVVVNRSEEKVAA 309
Query: 309 IREEMKD-IEIVYRPLTEMYEAAAEADVVFTSTASETPLFTKEHAEALPAISDAMGGVRL 367
+R EM +EI+Y+PL EM AAEADVVFTSTASETPLF KE E LP + DA RL
Sbjct: 310 VRNEMPPGVEIIYKPLDEMLSCAAEADVVFTSTASETPLFLKEQVETLPPVRDA----RL 365
Query: 368 FVDISVPRNVSACVSEVGHARVYNVDDLKEVVEANKEDRLRKAMEAQTIITQELKRFEAW 427
FVDISVPRNV +CV+E+ RV+NVDDLKEVV ANKEDR+RKAM+AQ IIT E K FEAW
Sbjct: 366 FVDISVPRNVGSCVAEIDGTRVFNVDDLKEVVAANKEDRVRKAMDAQAIITDESKHFEAW 425
Query: 428 RDSLETVPTIKKLRSYADRIRASELEKCLQKIGEDALTKKMRRSIEELSTGIVNKLLHGP 487
RDSLETVPTIKKLR Y +RI A+E+EK L K+G D + KKMR+++++L GIVNKLLHGP
Sbjct: 426 RDSLETVPTIKKLRGYTERIIAAEIEKSLPKMGID-MNKKMRKTVDDLIRGIVNKLLHGP 484
Query: 488 LQHLRCDGSDSRTLDETLENMHALNRMFSLD 518
+QHLRCDG+DSRTL ETL+NM ALNRM+ LD
Sbjct: 485 MQHLRCDGNDSRTLSETLDNMQALNRMYGLD 515
>AT2G31250.1 | chr2:13319702-13321526 REVERSE LENGTH=525
Length = 524
Score = 487 bits (1253), Expect = e-138, Method: Compositional matrix adjust.
Identities = 253/444 (56%), Positives = 320/444 (72%), Gaps = 12/444 (2%)
Query: 79 DRYMKERSSIAVIGLSVHTAPVEMREKLAVAEELWPRAISELTSLNHIEEAAVLSTCNRM 138
DRY +ERSSI VIGLS HT+P+EMRE+LA+ E WP AI++L +LNHIEEAAVLSTCNR+
Sbjct: 74 DRYTRERSSIVVIGLSFHTSPLEMRERLAIPEAEWPLAITQLCALNHIEEAAVLSTCNRI 133
Query: 139 EIYVVALSWNRGIREVVDWMSKKSGIPASELREHLFMLRDSDATRHLFEVSAGLDSLVLG 198
EIYV ALS RG++EV +WMSK+SGIP S++ +H F+L + DAT+HLF+VSAGL+SLV+G
Sbjct: 134 EIYVSALSRYRGVKEVTEWMSKRSGIPVSDICQHRFLLYNKDATQHLFQVSAGLESLVIG 193
Query: 199 EGQILAQVK---QVVRSGQNSGGLGKNIDRMFKDAITAGKRVRCETNIXXXXXXXXXXXX 255
E QI +QV+ QVV+ G G+ I +F+ A AGKRVR +TNI
Sbjct: 194 ENQIQSQVRKAEQVVK----QEGFGRIISTLFEKANKAGKRVRAQTNIASGAVSVSSAAV 249
Query: 256 ELALMKLPKSECLSARMLLIGAGKMGKLVVKHLIAKGCKKXXXXXXXXXXXDAIREEMKD 315
ELAL KLP S SA ML+IGAG+MGK +++HL+AKGC K AIR+EM+
Sbjct: 250 ELALTKLPGS-VSSAMMLVIGAGEMGKRIIEHLVAKGCTKMVVMNRSEDKVAAIRKEMQS 308
Query: 316 -IEIVYRPLTEMYEAAAEADVVFTSTASETPLFTKEHAEALPAISDAMGGVRLFVDISVP 374
+EI+Y+PL E+ AAEA+V+FTST+SETPLF KEH E LP RLFVDISVP
Sbjct: 309 GVEIIYKPLDEILACAAEANVIFTSTSSETPLFLKEHVEILPPCPADYA--RLFVDISVP 366
Query: 375 RNVSACVSEVGHARVYNVDDLKEVVEANKEDRLRKAMEAQTIITQELKRFEAWRDSLETV 434
RNV +CV+E+ ARVYNVDDLKEVV ANKEDR RK+MEA II +E FE WRDSL+T
Sbjct: 367 RNVGSCVAELDSARVYNVDDLKEVVAANKEDRARKSMEALPIIREETIEFEGWRDSLQTF 426
Query: 435 PTIKKLRSYADRIRASELEKCLQKIGEDALTKKMRRSIEELSTGIVNKLLHGPLQHLRCD 494
PTI+KLRS +RIRA +EK + K G + + KK R ++E+ + IVN +L P++HLR D
Sbjct: 427 PTIRKLRSKTERIRAECVEKLISKHG-NGMDKKTREAVEKQTRIIVNNILDYPMKHLRYD 485
Query: 495 GSDSRTLDETLENMHALNRMFSLD 518
G+ S L ETLENM A+NR++ LD
Sbjct: 486 GTGSSKLRETLENMQAVNRIYELD 509
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.131 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,126,632
Number of extensions: 300736
Number of successful extensions: 951
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 942
Number of HSP's successfully gapped: 3
Length of query: 537
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 434
Effective length of database: 8,282,721
Effective search space: 3594700914
Effective search space used: 3594700914
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)