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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0482900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glutaredoxin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.76 (0.0394) R2 : 0.511
β1 : 2.32 (0.145) R2dD : 0.279 R2D : 0.169
β2 : 0.742 (0.104) R2dC : 0.0566 R2C : -0.0171
β3 : 3.34 (0.2) R2dE : 0.315 R2E : 0.173
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.51 (0.0846) R2dN8 : 0.0511 R2N8 : -0.0266
σ : 0.736
deviance : 249.81
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_____
C
peak time of C : 19.3
E
wheather : radiation
threshold : 1.528
memory length : 810
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 16.4
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
237.63 0.724 4.82 2.29 1.02 4.68 3.21 4.67 0.426 17.3 0.7074 773 16.3 --
245.79 0.73 4.76 2.33 0.857 4.11 1.64 -- 0.53 17.8 1.52 793 16.5 --
251.07 0.738 4.81 2.34 0.796 3.55 -- 2.06 0.432 19 0.82 808 16.3 --
249.81 0.736 4.76 2.32 0.742 3.34 -- -- 0.51 19.3 1.528 810 16.4 --
279.42 0.779 4.77 2.27 -- 3.25 -- 0.863 0.394 -- 0.8176 778 16.4 --
305.97 0.82 4.82 1.95 1.26 -- 0.387 -- 0.292 0.344 -- -- -- --
306.59 0.82 4.82 1.94 1.26 -- -- -- 0.29 0.42 -- -- -- --
275.98 0.774 4.77 2.29 -- 3.1 -- -- 0.489 -- 1.54 783 16.4 --
375.67 0.903 4.83 -- 0.848 2.46 -- -- 0.242 19.8 2.22 840 14.1 --
406.08 0.942 4.8 1.98 -- -- -- -- 0.31 -- -- -- -- --
405.7 0.942 4.87 -- 1.29 -- -- -- 0.0736 0.497 -- -- -- --
387.05 0.916 4.84 -- -- 2.51 -- -- 0.244 -- 8.23 810 15 --
509.71 1.05 4.85 -- -- -- -- -- 0.0902 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 251.52 radiation 1.0 720 < th dose dependent rect. 7 18
3 252.80 radiation 1.0 720 < th dose dependent rect. 11 14
13 253.84 temperature 25.0 270 < th dose independent rect. 12 19
15 254.29 radiation 1.0 720 < th dose dependent sin 20 NA
25 255.51 wind 7.0 4320 > th dose independent rect. 17 1
26 255.51 radiation 1.0 720 < th dose independent rect. 7 18
27 255.53 wind 7.0 4320 < th dose independent rect. 17 3
31 255.90 wind 7.0 43200 < th dose independent rect. 17 1
33 256.00 radiation 1.0 720 > th dose independent rect. 7 22
34 256.04 radiation 1.0 720 > th dose independent rect. 7 12
45 256.19 wind 5.0 4320 > th dose dependent rect. 17 3
48 256.33 radiation 1.0 720 < th dose dependent rect. 7 11
49 256.50 radiation 1.0 270 < th dose dependent rect. 5 13
51 256.67 wind 7.0 43200 > th dose independent rect. 17 1
53 256.79 wind 7.0 4320 < th dose independent rect. 15 6
56 256.96 radiation 1.0 720 > th dose independent rect. 9 20
58 257.01 radiation 1.0 720 > th dose independent rect. 9 10
69 257.09 wind 7.0 4320 > th dose independent rect. 15 6
73 257.35 radiation 1.0 720 < th dose independent rect. 11 14
74 257.41 radiation 1.0 720 < th dose independent sin 22 NA
78 257.48 wind 7.0 4320 < th dose independent rect. 12 9
94 257.98 wind 5.0 4320 > th dose dependent rect. 19 1
98 258.02 wind 7.0 4320 < th dose independent rect. 10 11
105 258.14 wind 7.0 4320 > th dose independent rect. 12 9
121 258.49 radiation 1.0 720 > th dose independent sin 20 NA
128 258.64 radiation 1.0 270 < th dose independent rect. 5 13
135 258.82 wind 7.0 4320 > th dose independent rect. 10 11
156 259.18 wind 5.0 14400 > th dose independent rect. 7 3
159 259.25 radiation 1.0 720 < th dose dependent rect. 9 9
161 259.27 radiation 1.0 720 < th dose dependent rect. 11 7
165 259.30 wind 5.0 14400 > th dose independent rect. 8 1
169 259.33 wind 5.0 14400 < th dose independent rect. 7 3
172 259.41 wind 7.0 4320 < th dose independent sin 19 NA
180 259.52 wind 7.0 4320 > th dose dependent rect. 15 6
204 259.76 wind 7.0 43200 > th dose dependent rect. 14 7
213 259.92 wind 5.0 14400 < th dose independent rect. 8 1
236 260.14 wind 7.0 4320 > th dose independent sin 19 NA
262 260.42 wind 7.0 43200 > th dose dependent rect. 14 4
334 261.10 wind 9.0 43200 > th dose independent rect. 14 7
363 261.40 wind 7.0 43200 > th dose independent rect. 11 10
383 261.58 humidity 60.0 14400 > th dose independent rect. 21 9
397 261.72 wind 9.0 43200 < th dose independent rect. 14 7
409 261.84 wind 7.0 43200 < th dose independent rect. 17 4
422 262.00 wind 7.0 43200 < th dose independent rect. 11 10
431 262.07 wind 5.0 4320 > th dose dependent rect. 12 9
460 262.28 wind 5.0 14400 > th dose dependent rect. 8 1
480 262.43 atmosphere 995.0 43200 > th dose independent rect. 12 1
491 262.49 wind 7.0 43200 > th dose independent rect. 17 4
495 262.49 wind 5.0 43200 > th dose dependent rect. 19 1
506 262.60 wind 5.0 4320 > th dose dependent rect. 10 11
563 262.89 wind 5.0 43200 > th dose dependent rect. 17 1
652 263.44 temperature 25.0 90 < th dose independent rect. 15 6
655 263.45 wind 9.0 43200 < th dose independent rect. 14 1
710 263.75 wind 5.0 4320 > th dose dependent sin 18 NA
719 263.78 radiation 1.0 720 < th dose independent rect. 19 23
732 263.84 wind 7.0 43200 > th dose independent sin 19 NA
769 264.03 atmosphere 1000.0 43200 < th dose dependent rect. 9 1
785 264.12 wind 7.0 43200 < th dose independent sin 19 NA
791 264.13 humidity 70.0 10 > th dose dependent rect. 6 14
802 264.18 precipitation 0.1 43200 > th dose dependent rect. 16 2
821 264.28 wind 3.0 43200 < th dose dependent rect. 8 1
827 264.32 radiation 1.0 43200 > th dose dependent rect. 5 1
850 264.39 wind 7.0 43200 < th dose independent rect. 19 1
877 264.47 wind 7.0 43200 > th dose independent rect. 5 16
905 264.58 wind 7.0 4320 < th dose independent rect. 10 4
908 264.59 humidity 80.0 43200 < th dose dependent rect. 2 6
913 264.61 wind 3.0 43200 < th dose dependent rect. 7 3
914 264.61 atmosphere 995.0 43200 < th dose dependent rect. 13 3
942 264.69 wind 7.0 43200 < th dose independent rect. 5 16
943 264.69 wind 7.0 43200 > th dose dependent sin 17 NA
945 264.70 wind 7.0 43200 > th dose independent rect. 11 19
964 264.76 humidity 80.0 43200 > th dose independent rect. 23 9
974 264.78 radiation 1.0 1440 > th dose independent rect. 10 3
983 264.80 wind 7.0 43200 > th dose independent rect. 13 1
985 264.80 wind 7.0 43200 < th dose independent rect. 16 6