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Os10g0478400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.6 (0.0254) R2 : 0.327
β1 : 1.38 (0.0929) R2dD : 0.338 R2D : 0.298
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.209 (0.0542) R2dN8 : 0.0295 R2N8 : -0.0106
σ : 0.476
deviance : 103.82
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
74.58 0.406 8.45 2.64 0.374 -1.05 -0.092 4.07 0.46 6.93 26.3 1351 -- --
78.75 0.413 8.51 1.67 0.385 -0.689 -0.0307 -- 0.476 7.99 25.12 8879 -- --
74.38 0.402 8.46 2.59 0.355 -1.12 -- 4.26 0.426 6.5 26.6 1238 -- --
77.01 0.409 8.54 1.62 0.359 -0.692 -- -- 0.399 7.7 26.36 7535 -- --
78.24 0.412 8.46 2.72 -- -1.3 -- 5.2 0.495 -- 26.2 1869 -- --
96.31 0.46 8.59 1.38 0.373 -- -0.0269 -- 0.204 7.77 -- -- -- --
96.31 0.46 8.59 1.38 0.372 -- -- -- 0.204 7.79 -- -- -- --
83.14 0.425 8.55 1.64 -- -0.729 -- -- 0.423 -- 26.3 7728 -- --
139.38 0.55 8.61 -- 0.366 -0.416 -- -- 0.101 7.87 29.1 7577 -- --
103.82 0.476 8.6 1.38 -- -- -- -- 0.209 -- -- -- -- --
146.15 0.566 8.62 -- 0.383 -- -- -- 0.0508 7.54 -- -- -- --
144.46 0.56 8.6 -- -- -0.368 -- -- 0.187 -- 33.57 7657 -- --
154.02 0.579 8.63 -- -- -- -- -- 0.0562 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 69.30 humidity 80.0 43200 > th dose independent rect. 4 1
3 69.63 humidity 80.0 43200 < th dose independent rect. 4 1
11 70.16 humidity 80.0 43200 < th dose independent rect. 23 7
12 70.17 temperature 25.0 1440 > th dose dependent rect. 16 2
16 70.29 humidity 80.0 43200 < th dose independent rect. 23 2
25 70.43 humidity 80.0 43200 > th dose independent rect. 24 6
36 70.55 humidity 80.0 43200 < th dose dependent rect. 22 1
37 70.56 humidity 70.0 14400 < th dose dependent rect. 17 15
42 70.62 humidity 70.0 14400 < th dose dependent rect. 17 2
48 70.70 radiation 10.0 1440 < th dose independent rect. 17 1
68 70.80 wind 3.0 43200 < th dose independent rect. 2 12
70 70.81 humidity 80.0 43200 > th dose independent rect. 24 1
75 70.85 wind 3.0 43200 > th dose independent rect. 2 12
86 70.96 wind 5.0 43200 < th dose dependent rect. 11 1
89 70.99 wind 1.0 43200 > th dose dependent rect. 24 16
90 71.00 radiation 10.0 1440 < th dose independent rect. 17 3
97 71.03 radiation 10.0 1440 < th dose independent rect. 17 7
98 71.03 radiation 10.0 1440 < th dose independent rect. 17 9
103 71.06 radiation 10.0 1440 < th dose independent rect. 17 11
104 71.06 wind 3.0 43200 < th dose independent rect. 20 18
117 71.11 wind 1.0 43200 > th dose dependent rect. 3 13
120 71.15 wind 3.0 43200 > th dose independent sin 4 NA
124 71.18 wind 3.0 43200 < th dose independent rect. 19 15
127 71.19 wind 3.0 43200 > th dose independent rect. 20 18
133 71.23 wind 3.0 43200 < th dose independent sin 5 NA
135 71.23 wind 9.0 43200 < th dose dependent rect. 24 16
138 71.25 wind 3.0 43200 < th dose independent rect. 20 11
144 71.27 humidity 60.0 14400 < th dose independent rect. 16 4
194 71.39 wind 9.0 43200 < th dose dependent rect. 3 13
201 71.42 wind 1.0 43200 > th dose dependent sin 3 NA
205 71.45 wind 1.0 43200 < th dose independent rect. 1 1
224 71.51 wind 9.0 43200 < th dose independent rect. 8 6
234 71.54 wind 3.0 43200 > th dose independent rect. 19 15
250 71.59 wind 3.0 43200 < th dose independent sin 9 NA
283 71.68 wind 3.0 43200 > th dose independent rect. 20 11
287 71.69 wind 9.0 43200 < th dose dependent sin 3 NA
296 71.73 wind 9.0 43200 < th dose independent rect. 5 9
302 71.77 wind 9.0 43200 < th dose independent rect. 24 15
309 71.79 wind 9.0 43200 < th dose independent rect. 2 13
310 71.79 wind 9.0 43200 > th dose independent rect. 19 20
317 71.80 precipitation 0.1 43200 > th dose dependent rect. 19 1
321 71.82 wind 1.0 43200 > th dose dependent rect. 11 2
329 71.84 humidity 70.0 14400 < th dose independent rect. 18 1
338 71.85 humidity 90.0 14400 > th dose dependent rect. 19 7
372 71.91 wind 3.0 43200 > th dose independent sin 9 NA
373 71.91 humidity 60.0 14400 > th dose independent rect. 16 4
406 71.97 radiation 1.0 1440 < th dose dependent rect. 18 8
413 71.98 wind 9.0 43200 < th dose independent rect. 19 20
419 71.99 humidity 60.0 14400 > th dose independent rect. 17 1
439 72.03 radiation 1.0 1440 < th dose dependent rect. 18 10
441 72.04 radiation 10.0 1440 > th dose independent rect. 17 13
468 72.07 wind 9.0 43200 > th dose independent rect. 9 5
479 72.09 wind 9.0 43200 > th dose independent rect. 7 8
482 72.09 wind 1.0 43200 > th dose dependent rect. 6 1
485 72.10 radiation 10.0 1440 > th dose independent rect. 17 1
527 72.15 wind 7.0 43200 > th dose dependent rect. 5 11
542 72.18 wind 9.0 43200 > th dose independent rect. 24 15
551 72.19 wind 5.0 43200 < th dose dependent rect. 9 4
559 72.21 radiation 1.0 1440 < th dose dependent rect. 18 4
567 72.23 wind 9.0 43200 > th dose independent rect. 2 13
577 72.25 wind 3.0 43200 > th dose independent rect. 11 2
579 72.25 radiation 1.0 1440 < th dose dependent rect. 18 1
612 72.30 wind 1.0 43200 < th dose dependent rect. 1 1
613 72.30 wind 9.0 43200 > th dose dependent rect. 10 5
629 72.33 wind 3.0 43200 < th dose independent rect. 2 5
649 72.36 wind 5.0 43200 < th dose dependent rect. 6 8
654 72.37 wind 3.0 43200 < th dose dependent rect. 24 4
664 72.38 wind 3.0 43200 < th dose dependent rect. 24 12
670 72.39 wind 7.0 43200 > th dose dependent rect. 2 14
671 72.39 wind 7.0 43200 > th dose dependent rect. 24 16
710 72.46 radiation 1.0 14400 < th dose independent rect. 18 11
715 72.47 humidity 50.0 1440 > th dose dependent rect. 18 1
717 72.47 wind 7.0 43200 > th dose dependent rect. 8 6
741 72.51 wind 3.0 43200 > th dose independent rect. 6 1
742 72.51 precipitation 0.1 43200 > th dose independent rect. 19 1
753 72.52 radiation 1.0 14400 < th dose independent rect. 18 8
771 72.54 wind 3.0 43200 > th dose independent rect. 1 9
778 72.55 humidity 80.0 43200 < th dose dependent rect. 5 1
782 72.56 wind 3.0 43200 > th dose independent rect. 2 5
790 72.56 wind 1.0 43200 > th dose dependent rect. 9 5
792 72.57 radiation 1.0 14400 < th dose independent rect. 18 3
796 72.58 radiation 1.0 14400 < th dose independent rect. 18 1
797 72.58 precipitation 0.1 43200 < th dose independent rect. 19 1
802 72.58 precipitation 0.1 43200 < th dose dependent rect. 19 1
855 72.66 wind 9.0 43200 < th dose dependent rect. 9 5
904 72.75 wind 1.0 43200 > th dose independent rect. 1 1
908 72.75 wind 1.0 43200 > th dose dependent rect. 15 22
921 72.79 radiation 1.0 14400 > th dose independent rect. 18 1
970 72.84 wind 9.0 43200 < th dose dependent rect. 15 22
971 72.85 wind 3.0 43200 > th dose independent rect. 9 4
974 72.85 wind 7.0 43200 > th dose dependent sin 2 NA
981 72.86 wind 3.0 43200 < th dose independent rect. 8 5
990 72.87 wind 3.0 43200 > th dose independent rect. 4 3
997 72.88 wind 3.0 43200 < th dose independent rect. 11 1